Strain identifier

BacDive ID: 16512

Type strain: Yes

Species: Microbispora rosea subsp. aerata

Strain Designation: P 132

Strain history: KCC A-0076 <-- H. A. Lechevalier P-132.

NCBI tax ID(s): 147065 (subspecies)

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General

@ref: 10844

BacDive-ID: 16512

DSM-Number: 43176

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Microbispora rosea subsp. aerata P 132 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 147065
  • Matching level: subspecies

strain history

@refhistory
10844<- P. Hirsch <- ATCC <- M.P. Lechevalier, P 132 (Waksmania rosea)
67770KCC A-0076 <-- H. A. Lechevalier P-132.

doi: 10.13145/bacdive16512.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microbispora
  • species: Microbispora rosea subsp. aerata
  • full scientific name: Microbispora rosea subsp. aerata (Gerber and Lechevalier 1964) Miyadoh et al. 1991

  • synonyms

    @refsynonym
    20215Microbispora aerata
    20215Waksmania aerata
    20215Microbispora thermorosea
    20215Microbispora thermodiastatica

@ref: 10844

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microbispora

species: Microbispora rosea subsp. aerata

full scientific name: Microbispora rosea subsp. aerata (Gerber and Lechevalier 1964) Miyadoh et al. 1991

strain designation: P 132

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

  • @ref: 10844
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43176.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10844GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10844ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10844positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes95
69480yes100

compound production

@refcompound
10844iodinin
10844phenazine
10844phenoxazinones

observation

  • @ref: 67770
  • observation: quinones: MK-9, MK-9(H2), MK-9(H4)

metabolite production

  • @ref: 67770
  • Chebi-ID: 39201
  • metabolite: phenazines
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10844soil
67770SoilFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_31406.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_1060;98_23348;99_31406&stattab=map
  • Last taxonomy: Microbispora
  • 16S sequence: U48984
  • Sequence Identity:
  • Total samples: 207
  • soil counts: 141
  • aquatic counts: 17
  • animal counts: 14
  • plant counts: 35

Safety information

risk assessment

  • @ref: 10844
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Microbispora aerata 16S rRNA gene
  • accession: U48984
  • length: 1415
  • database: ena
  • NCBI tax ID: 147065

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbispora rosea subsp. aerata JCM 3076GCA_014647835scaffoldncbi147065
66792Microbispora rosea subsp. aerata NBRC 14624GCA_016863075contigncbi147065
66792Microbispora rosea subsp. aerata strain JCM 3076147065.3wgspatric147065
66792Microbispora rosea subsp. aerata strain NBRC 14624147065.4wgspatric147065

GC content

@refGC-contentmethod
6777072thermal denaturation, midpoint method (Tm)
6777067thermal denaturation, midpoint method (Tm)
6777070.8high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes95no
flagellatedno98.003no
gram-positiveyes90.259no
anaerobicno99.118no
aerobicyes90.089no
halophileno91.927no
spore-formingyes93.468no
thermophileno93.309yes
glucose-utilyes90.145no
motileno92.979no
glucose-fermentno93.141no

External links

@ref: 10844

culture collection no.: DSM 43176, ATCC 15448, JCM 3076, BCRC 11655, CGMCC 4.5565, IFO 12581, IFO 14624, IMSNU 20073, KCTC 9309, MTCC 1546, NBRC 12581, NBRC 14624, VKM Ac-1507

straininfo link

  • @ref: 85545
  • straininfo: 386960

literature

  • topic: Phylogeny
  • Pubmed-ID: 2283505
  • title: A taxonomic review of the genus Microbispora and a proposal to transfer two species to the genus Actinomadura and to combine ten species into Microbispora rosea.
  • authors: Miyadoh S, Amano S, Tohyama H, Shomura T
  • journal: J Gen Microbiol
  • DOI: 10.1099/00221287-136-9-1905
  • year: 1990
  • mesh: Actinomycetales/*classification/genetics/ultrastructure, DNA, Bacterial/analysis, Fatty Acids/analysis, Microscopy, Electron, Scanning, Spores, Bacterial/ultrastructure

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10844Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43176)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43176
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85545Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID386960.1StrainInfo: A central database for resolving microbial strain identifiers