Strain identifier

BacDive ID: 16502

Type strain: Yes

Species: Streptomyces atacamensis

Strain Designation: C60

Strain history: <- S. W. Kwon, KACC; KACC 15492

NCBI tax ID(s): 531966 (species)

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General

@ref: 18107

BacDive-ID: 16502

DSM-Number: 42065

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces atacamensis C60 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from extreme hyper-arid soil.

NCBI tax id

  • NCBI tax id: 531966
  • Matching level: species

strain history

  • @ref: 18107
  • history: <- S. W. Kwon, KACC; KACC 15492

doi: 10.13145/bacdive16502.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces atacamensis
  • full scientific name: Streptomyces atacamensis Santhanam et al. 2012

@ref: 18107

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces atacamensis

full scientific name: Streptomyces atacamensis Santhanam et al. 2012

strain designation: C60

type strain: yes

Morphology

cell morphology

  • @ref: 30549
  • gram stain: positive

colony morphology

@refcolony colormedium used
69235ColourlessISP 2
69235ColourlessISP 6
69235Honey yellow (1005)suter without tyrosine
69235Ivory (1014)ISP 7
69235Lemon yellow (1012)ISP 3
69235Lemon yellow (1012)ISP 5
69235Sand yellow (1002)suter with tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69235yesAerial myceliumISP 2
69235yesAerial myceliumISP 3
69235yesAerial myceliumISP 4Silk grey (7044)
69235noAerial myceliumISP 5
69235noAerial myceliumISP 6
69235noAerial myceliumISP 7
69235yesAerial myceliumsuter with tyrosineTraffic white (9016), grey white (9002)
69235noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
30549no
69235nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
18107https://www.dsmz.de/microorganisms/photos/DSM_42065.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69235DSM_42065_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69235DSM_42065_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18107GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18107STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
18107ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18107positivegrowth28mesophilic
30549positivegrowth10-45

culture pH

  • @ref: 30549
  • ability: positive
  • type: growth
  • pH: 04-11
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 30549
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30549
  • spore formation: yes

halophily

  • @ref: 69235
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6923522599arabinose+growth
3054918403L-arabitol+carbon source
3054928757fructose+carbon source
3054917234glucose+carbon source
3054917754glycerol+carbon source
3054928087glycogen+carbon source
3054917306maltose+carbon source
3054937684mannose+carbon source
3054917814salicin+carbon source
3054930911sorbitol+carbon source
6923562968cellulose+/-growth
6923528757fructose+growth
6923517234glucose+growth
6923517268inositol-growth
6923537684mannose-growth
6923516634raffinose+/-growth
6923526546rhamnose+growth
6923517992sucrose+growth
6923518222xylose+growth
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose+fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation

enzymes

@refvalueactivityec
30549gelatinase+
30549urease+3.5.1.5
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69235---+--+-+-+++/-+/-+/----+/-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69235++/-+-+++/---++---+/-----

Isolation, sampling and environmental information

isolation

  • @ref: 18107
  • sample type: extreme hyper-arid soil
  • geographic location: Atacama Desert, Valle de la Luna (23° 02' S 68° 20' W)
  • country: Chile
  • origin.country: CHL
  • continent: Middle and South America
  • latitude: -23.0333
  • longitude: -68.3333

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Climate#Hot#Arid

taxonmaps

  • @ref: 69479
  • File name: preview.99_54950.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2143;97_2583;98_10732;99_54950&stattab=map
  • Last taxonomy: Streptomyces atacamensis
  • 16S sequence: HE577171
  • Sequence Identity:
  • Total samples: 9
  • soil counts: 5
  • aquatic counts: 1
  • animal counts: 3

Safety information

risk assessment

  • @ref: 18107
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18107
  • description: Streptomyces atacamensis partial 16S rRNA gene, type strain C60T
  • accession: HE577171
  • length: 1457
  • database: ena
  • NCBI tax ID: 531966

GC content

  • @ref: 18107
  • GC-content: 71.5

External links

@ref: 18107

culture collection no.: DSM 42065, CGMCC 4.7018, KACC 15492

straininfo link

  • @ref: 85535
  • straininfo: 407468

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22199226Streptomyces atacamensis sp. nov., isolated from an extreme hyper-arid soil of the Atacama Desert, Chile.Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Weon HY, Andrews BA, Asenjo JA, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.038463-02011Bacterial Typing Techniques, Chile, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analysisGenetics
Phylogeny24436069Streptomyces barkulensis sp. nov., isolated from an estuarine lake.Ray L, Mishra SR, Panda AN, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina VInt J Syst Evol Microbiol10.1099/ijs.0.056614-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Estuaries, Fatty Acids/chemistry, Geologic Sediments/microbiology, India, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27220564Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment.Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina VInt J Syst Evol Microbiol10.1099/ijsem.0.0011762016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18107Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42065)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42065
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30549Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2688028776041
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69235Wink, J.https://cdn.dsmz.de/wink/DSM%2042065.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85535Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407468.1StrainInfo: A central database for resolving microbial strain identifiers