Strain identifier
BacDive ID: 164999
Type strain: 
Species: Streptomyces hygroscopicus subsp. hygroscopicus
Strain history: KCC S-0712 <-- Kaken Chem. Co.; 80432.
NCBI tax ID(s): 68042 (subspecies)
General
@ref: 67770
BacDive-ID: 164999
keywords: genome sequence, Bacteria, spore-forming
description: Streptomyces hygroscopicus subsp. hygroscopicus JCM 4712 is a spore-forming bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 68042
- Matching level: subspecies
strain history
- @ref: 67770
- history: KCC S-0712 <-- Kaken Chem. Co.; 80432.
doi: 10.13145/bacdive164999.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces hygroscopicus subsp. hygroscopicus
- full scientific name: Streptomyces hygroscopicus subsp. hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces hygroscopicus subsp. hygroscopicus
full scientific name: Streptomyces hygroscopicus subsp. hygroscopicus (Jensen 1931) Yntsen et al. 1956
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
metabolite production
- @ref: 67770
- metabolite: minimycin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Nyugawa, Ehime Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
- @ref: 66792
- description: Streptomyces hygroscopicus ATCC 21589
- accession: GCA_026168105
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1912
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.965 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.399 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.83 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 88.182 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.5 | no |
External links
@ref: 67770
culture collection no.: JCM 4712, ATCC 21589, IFO 16555, NBRC 16555
straininfo link
- @ref: 114361
- straininfo: 37613
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114361 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID37613.1 |