Strain identifier

BacDive ID: 16497

Type strain: Yes

Species: Streptomyces herbaceus

Strain Designation: BK119

Strain history: <- S. W. Kwon, KACC; KACC 21001

NCBI tax ID(s): 887449 (species)

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General

@ref: 18062

BacDive-ID: 16497

DSM-Number: 42060

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces herbaceus BK119 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil of a hay meadow.

NCBI tax id

  • NCBI tax id: 887449
  • Matching level: species

strain history

  • @ref: 18062
  • history: <- S. W. Kwon, KACC; KACC 21001

doi: 10.13145/bacdive16497.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces herbaceus
  • full scientific name: Streptomyces herbaceus Kim et al. 2012

@ref: 18062

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces herbaceus

full scientific name: Streptomyces herbaceus Kim et al. 2012

strain designation: BK119

type strain: yes

Morphology

cell morphology

  • @ref: 30450
  • gram stain: positive
  • motility: no

multimedia

  • @ref: 18062
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42060.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18062GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18062STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18062positivegrowth28mesophilic
30450positivegrowth10-37

culture pH

  • @ref: 30450
  • ability: positive
  • type: growth
  • pH: 05-10
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 30450
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30450
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3045018403L-arabitol+carbon source
3045017306maltose+carbon source
3045028053melibiose+carbon source
3045030911sorbitol+carbon source
304504853esculin+hydrolysis

enzymes

  • @ref: 30450
  • value: gelatinase
  • activity: +

Isolation, sampling and environmental information

isolation

  • @ref: 18062
  • sample type: soil of a hay meadow
  • geographic location: Northumberland, Cockle Park Experimental Farm
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Meadow
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 18062
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18062
  • description: Streptomyces herbaceus partial 16S rRNA gene, type strain BK119T
  • accession: FR692091
  • length: 1460
  • database: ena
  • NCBI tax ID: 887449

GC content

@refGC-contentmethod
1806270.2thermal denaturation, midpoint method (Tm)
3045070.2

External links

@ref: 18062

culture collection no.: DSM 42060, CGMCC 4.5797, KACC 21001, NRRL B-59128

straininfo link

  • @ref: 85530
  • straininfo: 406927

literature

  • topic: Phylogeny
  • Pubmed-ID: 21984681
  • title: Streptomyces herbaceus sp. nov., Streptomyces incanus sp. nov. and Streptomyces pratens sp. nov., isolated from the soil of a hay meadow.
  • authors: Kim BY, Rong X, Zucchi TD, Bonda ANV, Huang Y, Goodfellow M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.036384-0
  • year: 2011
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Genotype, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, *Phylogeny, Poaceae, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology, Species Specificity, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18062Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42060)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42060
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30450Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2678528776041
85530Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406927.1StrainInfo: A central database for resolving microbial strain identifiers