Strain identifier

BacDive ID: 16496

Type strain: Yes

Species: Streptomyces pharmamarensis

Strain Designation: PM267

Strain history: <- M. E. Trujillo, Depart. Microbiol. y Gen., Univ. Salamanca, Spain; PM267 <- F. de la Calle

NCBI tax ID(s): 889792 (species)

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General

@ref: 17607

BacDive-ID: 16496

DSM-Number: 42032

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped

description: Streptomyces pharmamarensis PM267 is an aerobe, spore-forming, mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 889792
  • Matching level: species

strain history

  • @ref: 17607
  • history: <- M. E. Trujillo, Depart. Microbiol. y Gen., Univ. Salamanca, Spain; PM267 <- F. de la Calle

doi: 10.13145/bacdive16496.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces pharmamarensis
  • full scientific name: Streptomyces pharmamarensis Carro et al. 2012

@ref: 17607

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces pharmamarensis

full scientific name: Streptomyces pharmamarensis Carro et al. 2012

strain designation: PM267

type strain: yes

Morphology

cell morphology

  • @ref: 30348
  • gram stain: positive
  • cell width: 1-1.2 µm
  • cell shape: ovoid-shaped

pigmentation

  • @ref: 30348
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17607
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17607positivegrowth28mesophilic
30348positivegrowth20-30

Physiology and metabolism

oxygen tolerance

  • @ref: 30348
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30348
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30348NaClpositivegrowth<9 %
30348NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3034822599arabinose+carbon source
3034817057cellobiose+carbon source
3034828260galactose+carbon source
3034817234glucose+carbon source
3034817306maltose+carbon source
3034829864mannitol+carbon source
3034828053melibiose+carbon source
3034826271proline+carbon source
3034816634raffinose+carbon source
3034826546rhamnose+carbon source
3034817822serine+carbon source
3034817992sucrose+carbon source
3034827082trehalose+carbon source
3034818222xylose+carbon source

enzymes

@refvalueactivityec
30348alkaline phosphatase+3.1.3.1
30348catalase+1.11.1.6
30348gelatinase+
30348cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 17607
  • sample type: marine sediment
  • geographic location: Sicilia, Mediterranean Sea at a depth of 43 m
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 17607
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17607
  • description: Streptomyces pharmamarensis partial 16S rRNA gene, type strain PM267T
  • accession: FR693804
  • length: 1458
  • database: ena
  • NCBI tax ID: 889792

GC content

@refGC-contentmethod
1760771.2thermal denaturation, midpoint method (Tm)
3034871.2

External links

@ref: 17607

culture collection no.: DSM 42032, CECT 7841

straininfo link

  • @ref: 85529
  • straininfo: 379827

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21724951Streptomyces pharmamarensis sp. nov. isolated from a marine sediment.Carro L, Zuniga P, de la Calle F, Trujillo MEInt J Syst Evol Microbiol10.1099/ijs.0.034066-02011Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Mediterranean Sea, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysisGenetics
Phylogeny22527624Streptomyces phytohabitans sp. nov., a novel endophytic actinomycete isolated from medicinal plant Curcuma phaeocaulis.Bian GK, Qin S, Yuan B, Zhang YJ, Xing K, Ju XY, Li WJ, Jiang JHAntonie Van Leeuwenhoek10.1007/s10482-012-9737-82012China, Curcuma/*microbiology/physiology, Endophytes/classification/genetics/*isolation & purification/physiology, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, Plants, Medicinal/*microbiology/physiology, Streptomyces/classification/genetics/*isolation & purification/physiologyEnzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17607Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42032)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42032
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30348Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2668928776041
85529Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID379827.1StrainInfo: A central database for resolving microbial strain identifiers