Strain identifier
BacDive ID: 164957
Type strain: 
Species: Streptomyces triculaminicus
Strain history: KCC S-0242 <-- S. Suzuki 42-66.
NCBI tax ID(s): 2816232 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164957
keywords: genome sequence, aerobe, spore-forming, mesophilic
description: Streptomyces triculaminicus JCM 4242 is an aerobe, spore-forming, mesophilic prokaryote of the family Not assigned to family.
NCBI tax id
- NCBI tax id: 2816232
- Matching level: species
strain history
- @ref: 67770
- history: KCC S-0242 <-- S. Suzuki 42-66.
doi: 10.13145/bacdive164957.20250331.9.3
Name and taxonomic classification
@ref: 67770
phylum: Not assigned to order
class: Not assigned to order
order: Not assigned to order
family: Not assigned to family
genus: Streptomyces
species: Streptomyces triculaminicus
full scientific name: Streptomyces triculaminicus
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 91.5 | |
| 125439 | 99.9 | positive | |
| 125439 | no | 92.2 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 90.218 |
| 125439 | obligate aerobe | 99.3 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 91.591 |
| 125439 | yes | 95 |
compound production
- @ref: 67770
- compound: Triculamin
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces triculaminicus JCM 4242 | GCA_017349075 | contig | ncbi | 2816232 |
| 66792 | Streptomyces triculaminicus strain JCM 4242 | 2816232.3 | wgs | patric | 2816232 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.578 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.885 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.591 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.218 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 95 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 92.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.3 |
External links
@ref: 67770
culture collection no.: JCM 4242
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |