Strain identifier
BacDive ID: 16494
Type strain:
Species: Streptomyces nanhaiensis
Strain history: <- XP Tian, Yunnan Inst., China
NCBI tax ID(s): 679319 (species)
General
@ref: 15446
BacDive-ID: 16494
DSM-Number: 41926
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces nanhaiensis DSM 41926 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from deep-sea sediment.
NCBI tax id
- NCBI tax id: 679319
- Matching level: species
strain history
@ref | history |
---|---|
15446 | <- S.-K. Tang and W.-J. Li, YIM; SCSIO 01248 <- X.-P. Tian et al. |
67770 | KCTC 19401 <-- X.-P. Tian et al. SCSIO 01248. |
67771 | <- XP Tian, Yunnan Inst., China |
doi: 10.13145/bacdive16494.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces nanhaiensis
- full scientific name: Streptomyces nanhaiensis Tian et al. 2012
@ref: 15446
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces nanhaiensis
full scientific name: Streptomyces nanhaiensis Tian et al. 2012
type strain: yes
Morphology
cell morphology
@ref | gram stain |
---|---|
30245 | positive |
67771 | positive |
colony morphology
@ref | colony color | medium used |
---|---|---|
69313 | Golden yellow (1004) | ISP 4 |
69313 | Ivory (1014) | ISP 3 |
69313 | Sand yellow (1002) | ISP 2 |
69313 | Sand yellow (1002) | ISP 5 |
69313 | Sand yellow (1002) | ISP 6 |
69313 | Sand yellow (1002) | ISP 7 |
69313 | Sand yellow (1002) | suter with tyrosine |
69313 | Sand yellow (1002) | suter without tyrosine |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name | complex color |
---|---|---|---|---|
69313 | no | Aerial mycelium | ISP 2 | |
69313 | yes | Aerial mycelium | ISP 3 | |
69313 | yes | Aerial mycelium | ISP 4 | Cream (9001) |
69313 | no | Aerial mycelium | ISP 5 | |
69313 | no | Aerial mycelium | ISP 6 | |
69313 | yes | Aerial mycelium | ISP 7 | |
69313 | no | Aerial mycelium | suter with tyrosine | |
69313 | yes | Aerial mycelium | suter without tyrosine | Cream (9001) |
pigmentation
@ref | production | name | color |
---|---|---|---|
30245 | yes | ||
69313 | no | Melanin | |
69313 | yes | soluble pigment | Ivory (1014), sand yellow (1002) |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
15446 | https://www.dsmz.de/microorganisms/photos/DSM_41926.jpg | Medium 65 28°C | © Leibniz-Institut DSMZ |
69313 | DSM_41926_image3.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69313 | DSM_41926_image4.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
- @ref: 15446
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15446 | positive | growth | 28 | mesophilic |
30245 | positive | growth | 10-45 | |
30245 | positive | optimum | 28-37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30245 | positive | growth | 06-10 | alkaliphile |
30245 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30245 | aerobe |
67771 | aerobe |
spore formation
- @ref: 30245
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30245 | NaCl | positive | growth | 0-7.5 % |
30245 | NaCl | positive | optimum | 3 % |
69313 | NaCl | positive | growth | 0-10 % |
observation
@ref | observation |
---|---|
67770 | quinones: MK-9(H8), MK-9(H6) |
67771 | quinones: MK-9(H6), MK-9(H8)(36:55) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30245 | 30089 | acetate | + | carbon source |
30245 | 17057 | cellobiose | + | carbon source |
30245 | 28757 | fructose | + | carbon source |
30245 | 33984 | fucose | + | carbon source |
30245 | 28260 | galactose | + | carbon source |
30245 | 17234 | glucose | + | carbon source |
30245 | 17306 | maltose | + | carbon source |
30245 | 17992 | sucrose | + | carbon source |
30245 | 53424 | tween 20 | + | carbon source |
30245 | 53423 | tween 40 | + | carbon source |
30245 | 53425 | tween 60 | + | carbon source |
30245 | 18222 | xylose | + | carbon source |
30245 | 17632 | nitrate | + | reduction |
69313 | 22599 | arabinose | + | growth |
69313 | 62968 | cellulose | - | growth |
69313 | 28757 | fructose | +/- | growth |
69313 | 17234 | glucose | + | growth |
69313 | 17268 | inositol | - | growth |
69313 | 37684 | mannose | - | growth |
69313 | 16634 | raffinose | - | growth |
69313 | 26546 | rhamnose | + | growth |
69313 | 17992 | sucrose | + | growth |
69313 | 18222 | xylose | + | growth |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30245 | catalase | + | 1.11.1.6 |
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69313 | + | - | - | + | - | - | + | - | + | - | + | - | - | - | - | - | - | - | +/- |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69313 | + | + | + | +/- | + | + | - | - | - | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
15446 | deep-sea sediment | Northern South China Sea at a depth of 1632 m | China | CHN | Asia |
67770 | Sediment at a depth of 1,632 m | China | CHN | Asia | |
67771 | From marine sediment | Guangdong Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_15420.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2143;97_2583;98_10732;99_15420&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: GQ871748
- Sequence Identity:
- Total samples: 67
- soil counts: 39
- aquatic counts: 4
- animal counts: 14
- plant counts: 10
Safety information
risk assessment
- @ref: 15446
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15446
- description: Streptomyces nanhaiensis strain SCSIO 01248 16S ribosomal RNA gene, partial sequence
- accession: GQ871748
- length: 1448
- database: ena
- NCBI tax ID: 679319
GC content
@ref | GC-content | method |
---|---|---|
15446 | 71.9 | high performance liquid chromatography (HPLC) |
67771 | 71.9 |
External links
@ref: 15446
culture collection no.: DSM 41926, CCTCC AA 208007, KCTC 19401, SCSIO 01248, JCM 19964
straininfo link
- @ref: 85527
- straininfo: 404417
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21622834 | Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment. | Tian XP, Long LJ, Wang FZ, Xu Y, Li J, Zhang J, Zhang CS, Zhang S, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.031591-0 | 2011 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 24436069 | Streptomyces barkulensis sp. nov., isolated from an estuarine lake. | Ray L, Mishra SR, Panda AN, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V | Int J Syst Evol Microbiol | 10.1099/ijs.0.056614-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Estuaries, Fatty Acids/chemistry, Geologic Sediments/microbiology, India, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 26297343 | Streptomyces mangrovi sp. nov., an actinomycete from mangrove soil. | Wang Y, Huang H, Yuan W, Wei H, Chen Y, Zhu J, Liu M, Zou X, Bao S | Int J Syst Evol Microbiol | 10.1099/ijs.0.000382 | 2015 | China, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces/classification | Genetics |
Phylogeny | 27220564 | Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment. | Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001176 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification | Transcriptome |
Phylogeny | 27469580 | Streptomyces pini sp. nov., an actinomycete isolated from phylloplane of pine (Pinus sylvestris L.) needle-like leaves. | Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Pragatheswari D, Santhanakrishnan P, Kim SJ, Weon HY, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001336 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, *Phylogeny, Pinus sylvestris/*microbiology, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
15446 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41926) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41926 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30245 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26587 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69313 | Wink, J. | https://cdn.dsmz.de/wink/DSM%2041926.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
85527 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404417.1 | StrainInfo: A central database for resolving microbial strain identifiers |