Strain identifier

BacDive ID: 16494

Type strain: Yes

Species: Streptomyces nanhaiensis

Strain history: <- XP Tian, Yunnan Inst., China

NCBI tax ID(s): 679319 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15446

BacDive-ID: 16494

DSM-Number: 41926

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces nanhaiensis DSM 41926 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from deep-sea sediment.

NCBI tax id

  • NCBI tax id: 679319
  • Matching level: species

strain history

@refhistory
15446<- S.-K. Tang and W.-J. Li, YIM; SCSIO 01248 <- X.-P. Tian et al.
67770KCTC 19401 <-- X.-P. Tian et al. SCSIO 01248.
67771<- XP Tian, Yunnan Inst., China

doi: 10.13145/bacdive16494.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces nanhaiensis
  • full scientific name: Streptomyces nanhaiensis Tian et al. 2012

@ref: 15446

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces nanhaiensis

full scientific name: Streptomyces nanhaiensis Tian et al. 2012

type strain: yes

Morphology

cell morphology

@refgram stain
30245positive
67771positive

colony morphology

@refcolony colormedium used
69313Golden yellow (1004)ISP 4
69313Ivory (1014)ISP 3
69313Sand yellow (1002)ISP 2
69313Sand yellow (1002)ISP 5
69313Sand yellow (1002)ISP 6
69313Sand yellow (1002)ISP 7
69313Sand yellow (1002)suter with tyrosine
69313Sand yellow (1002)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69313noAerial myceliumISP 2
69313yesAerial myceliumISP 3
69313yesAerial myceliumISP 4Cream (9001)
69313noAerial myceliumISP 5
69313noAerial myceliumISP 6
69313yesAerial myceliumISP 7
69313noAerial myceliumsuter with tyrosine
69313yesAerial myceliumsuter without tyrosineCream (9001)

pigmentation

@refproductionnamecolor
30245yes
69313noMelanin
69313yessoluble pigmentIvory (1014), sand yellow (1002)

multimedia

@refmultimedia contentcaptionintellectual property rights
15446https://www.dsmz.de/microorganisms/photos/DSM_41926.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69313DSM_41926_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69313DSM_41926_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 15446
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15446positivegrowth28mesophilic
30245positivegrowth10-45
30245positiveoptimum28-37mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30245positivegrowth06-10alkaliphile
30245positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30245aerobe
67771aerobe

spore formation

  • @ref: 30245
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30245NaClpositivegrowth0-7.5 %
30245NaClpositiveoptimum3 %
69313NaClpositivegrowth0-10 %

observation

@refobservation
67770quinones: MK-9(H8), MK-9(H6)
67771quinones: MK-9(H6), MK-9(H8)(36:55)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3024530089acetate+carbon source
3024517057cellobiose+carbon source
3024528757fructose+carbon source
3024533984fucose+carbon source
3024528260galactose+carbon source
3024517234glucose+carbon source
3024517306maltose+carbon source
3024517992sucrose+carbon source
3024553424tween 20+carbon source
3024553423tween 40+carbon source
3024553425tween 60+carbon source
3024518222xylose+carbon source
3024517632nitrate+reduction
6931322599arabinose+growth
6931362968cellulose-growth
6931328757fructose+/-growth
6931317234glucose+growth
6931317268inositol-growth
6931337684mannose-growth
6931316634raffinose-growth
6931326546rhamnose+growth
6931317992sucrose+growth
6931318222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation

enzymes

@refvalueactivityec
30245catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69313+--+--+-+-+-------+/-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69313++++/-++---++---+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15446deep-sea sedimentNorthern South China Sea at a depth of 1632 mChinaCHNAsia
67770Sediment at a depth of 1,632 mChinaCHNAsia
67771From marine sedimentGuangdong ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_15420.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2143;97_2583;98_10732;99_15420&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: GQ871748
  • Sequence Identity:
  • Total samples: 67
  • soil counts: 39
  • aquatic counts: 4
  • animal counts: 14
  • plant counts: 10

Safety information

risk assessment

  • @ref: 15446
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15446
  • description: Streptomyces nanhaiensis strain SCSIO 01248 16S ribosomal RNA gene, partial sequence
  • accession: GQ871748
  • length: 1448
  • database: ena
  • NCBI tax ID: 679319

GC content

@refGC-contentmethod
1544671.9high performance liquid chromatography (HPLC)
6777171.9

External links

@ref: 15446

culture collection no.: DSM 41926, CCTCC AA 208007, KCTC 19401, SCSIO 01248, JCM 19964

straininfo link

  • @ref: 85527
  • straininfo: 404417

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21622834Streptomyces nanhaiensis sp. nov., a marine streptomycete isolated from a deep-sea sediment.Tian XP, Long LJ, Wang FZ, Xu Y, Li J, Zhang J, Zhang CS, Zhang S, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.031591-02011Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24436069Streptomyces barkulensis sp. nov., isolated from an estuarine lake.Ray L, Mishra SR, Panda AN, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina VInt J Syst Evol Microbiol10.1099/ijs.0.056614-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Estuaries, Fatty Acids/chemistry, Geologic Sediments/microbiology, India, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26297343Streptomyces mangrovi sp. nov., an actinomycete from mangrove soil.Wang Y, Huang H, Yuan W, Wei H, Chen Y, Zhu J, Liu M, Zou X, Bao SInt J Syst Evol Microbiol10.1099/ijs.0.0003822015China, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces/classificationGenetics
Phylogeny27220564Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment.Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina VInt J Syst Evol Microbiol10.1099/ijsem.0.0011762016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purificationTranscriptome
Phylogeny27469580Streptomyces pini sp. nov., an actinomycete isolated from phylloplane of pine (Pinus sylvestris L.) needle-like leaves.Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Pragatheswari D, Santhanakrishnan P, Kim SJ, Weon HY, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0013362016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, *Phylogeny, Pinus sylvestris/*microbiology, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15446Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41926)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41926
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30245Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2658728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69313Wink, J.https://cdn.dsmz.de/wink/DSM%2041926.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85527Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404417.1StrainInfo: A central database for resolving microbial strain identifiers