Strain identifier

BacDive ID: 16493

Type strain: Yes

Species: Streptomyces gramineus

Strain Designation: JR-43

Strain history: <- S. W. Kwon, KACC; KACC 15079

NCBI tax ID(s): 910542 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18060

BacDive-ID: 16493

DSM-Number: 42058

keywords: Gram-positive, mesophilic, spore-forming, aerobe, Bacteria, 16S sequence

description: Streptomyces gramineus JR-43 is an aerobe, spore-forming, mesophilic bacterium that was isolated from bamboo rhizosphere soil.

NCBI tax id

  • NCBI tax id: 910542
  • Matching level: species

strain history: <- S. W. Kwon, KACC; KACC 15079

doi: 10.13145/bacdive16493.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces gramineus
  • full scientific name: Streptomyces gramineus Lee et al. 2012

@ref: 18060

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces gramineus

full scientific name: Streptomyces gramineus Lee et al. 2012

strain designation: JR-43

type strain: yes

Morphology

cell morphology

  • @ref: 30167
  • gram stain: positive

pigmentation

  • @ref: 30167
  • production: yes

multimedia

  • @ref: 18060
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42058.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18060GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://bacmedia.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18060OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)yeshttps://bacmedia.dsmz.de/medium/248Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Oat flakes 20.0 g/l Agar 15.0 g/l Yeast extract 2.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
18060STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://bacmedia.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l CaCO3 1.998 g/l (NH4)2SO4 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18060positivegrowth28mesophilic
30167positivegrowth04-37
30167positiveoptimum28mesophilic

culture pH

  • @ref: 30167
  • ability: positive
  • type: growth
  • pH: 04-08

Physiology and metabolism

oxygen tolerance

  • @ref: 30167
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30167
  • spore formation: yes

halophily

  • @ref: 30167
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3016728757fructose+carbon source
3016717234glucose+carbon source
3016729864mannitol+carbon source
3016716634raffinose+carbon source
3016726546rhamnose+carbon source
3016717992sucrose+carbon source
3016718222xylose+carbon source

enzymes

  • @ref: 30167
  • value: gelatinase
  • activity: +

Isolation, sampling and environmental information

isolation

  • @ref: 18060
  • sample type: bamboo (Sasa borealis) rhizosphere soil
  • host species: Sasa borealis
  • geographic location: Damyang, Jeonnam
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 18060
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18060
  • description: Streptomyces gramineus strain JR-43 16S ribosomal RNA gene, partial sequence
  • accession: HM748598
  • length: 1422
  • database: ena
  • NCBI tax ID: 910542

GC content

@refGC-contentmethod
1806070.5high performance liquid chromatography (HPLC)
3016769-71

External links

@ref: 18060

culture collection no.: DSM 42058, KACC 15079, NBRC 107863

straininfo link

@refpassport
20218http://www.straininfo.net/strains/869906
20218http://www.straininfo.net/strains/869907

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21622836Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Han SI, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.030163-02011Antibiosis, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24478213Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.055210-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26296874Streptomyces olivicoloratus sp. nov., an antibiotic-producing bacterium isolated from soil.Nguyen TM, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0004042015Anti-Bacterial Agents/*biosynthesis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistryGenetics
Phylogeny27902221Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang JInt J Syst Evol Microbiol10.1099/ijsem.0.0015732017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18060Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42058)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42058
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2651710.1099/ijs.0.030163-021622836
30167Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126517