Strain identifier
BacDive ID: 16493
Type strain: 
Species: Streptomyces gramineus
Strain Designation: JR-43
Strain history: <- S. W. Kwon, KACC; KACC 15079
NCBI tax ID(s): 910542 (species)
version 8.1 (current version)
General
@ref: 18060
BacDive-ID: 16493
DSM-Number: 42058
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces gramineus JR-43 is an aerobe, spore-forming, mesophilic bacterium that was isolated from bamboo rhizosphere soil.
NCBI tax id
- NCBI tax id: 910542
- Matching level: species
strain history
- @ref: 18060
- history: <- S. W. Kwon, KACC; KACC 15079
doi: 10.13145/bacdive16493.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces gramineus
- full scientific name: Streptomyces gramineus Lee et al. 2012
@ref: 18060
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces gramineus
full scientific name: Streptomyces gramineus Lee et al. 2012
strain designation: JR-43
type strain: yes
Morphology
cell morphology
- @ref: 30167
- gram stain: positive
pigmentation
- @ref: 30167
- production: yes
multimedia
- @ref: 18060
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42058.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18060 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 18060 | OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) | yes | https://mediadive.dsmz.de/medium/248 | Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
| 18060 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18060 | positive | growth | 28 | mesophilic |
| 30167 | positive | growth | 04-37 | |
| 30167 | positive | optimum | 28 | mesophilic |
culture pH
- @ref: 30167
- ability: positive
- type: growth
- pH: 04-08
- PH range: acidophile
Physiology and metabolism
oxygen tolerance
- @ref: 30167
- oxygen tolerance: aerobe
spore formation
- @ref: 30167
- spore formation: yes
halophily
- @ref: 30167
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 3 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30167 | 28757 | fructose | + | carbon source |
| 30167 | 17234 | glucose | + | carbon source |
| 30167 | 29864 | mannitol | + | carbon source |
| 30167 | 16634 | raffinose | + | carbon source |
| 30167 | 26546 | rhamnose | + | carbon source |
| 30167 | 17992 | sucrose | + | carbon source |
| 30167 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 30167
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
- @ref: 18060
- sample type: bamboo (Sasa borealis) rhizosphere soil
- host species: Sasa borealis
- geographic location: Damyang, Jeonnam
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 18060
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18060
- description: Streptomyces gramineus strain JR-43 16S ribosomal RNA gene, partial sequence
- accession: HM748598
- length: 1422
- database: ena
- NCBI tax ID: 910542
GC content
| @ref | GC-content | method |
|---|---|---|
| 18060 | 70.5 | high performance liquid chromatography (HPLC) |
| 30167 | 69-71 |
External links
@ref: 18060
culture collection no.: DSM 42058, KACC 15079, NBRC 107863
straininfo link
- @ref: 85526
- straininfo: 400923
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21622836 | Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Han SI, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.030163-0 | 2011 | Antibiosis, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24478213 | Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.055210-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26296874 | Streptomyces olivicoloratus sp. nov., an antibiotic-producing bacterium isolated from soil. | Nguyen TM, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000404 | 2015 | Anti-Bacterial Agents/*biosynthesis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistry | Genetics |
| Phylogeny | 27902221 | Streptomyces fuscichromogenes sp. nov., an actinomycete from soil. | Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001573 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 18060 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42058) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42058 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30167 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26517 | 28776041 | |
| 85526 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400923.1 | StrainInfo: A central database for resolving microbial strain identifiers |