Archive BacDiveID:10.13145/bacdive16492.20221219.7.1

Strain identifier

BacDive ID: 16492

Type strain:

Species: Streptomyces qinglanensis

Strain Designation: 172205

Strain history: CGMCC 4.6825 <-- H. Hu et al. 172205.

NCBI tax ID(s): 943816 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 17693

BacDive-ID: 16492

DSM-Number: 42035

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, ovoid-shaped

description: Streptomyces qinglanensis 172205 is a spore-forming, mesophilic, ovoid-shaped bacterium that was isolated from mangrove soil.

NCBI tax id

NCBI tax id: 943816
Matching level: species

strain history

doi: 10.13145/bacdive16492.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces qinglanensis
full scientific name: Streptomyces qinglanensis Hu et al. 2012

@ref: 17693

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces qinglanensis

full scientific name: Streptomyces qinglanensis Hu et al. 2012 emend. Nouioui et al. 2018

strain designation: 172205

type strain: yes

Morphology

cell morphology

@ref	cell length	cell width	cell shape	gram stain	confidence
30273	0.5-1.0 µm	0.3-0.7 µm	ovoid-shaped
69480				positive	95.321

pigmentation

@ref: 30273
production: no

multimedia

@ref: 17693
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42035.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
17693	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17693	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
17693	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
17693	positive	growth	28	mesophilic
30273	positive	growth	15-37
30273	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

culture pH

@ref	ability	type	pH	PH range
30273	positive	growth	07-10	alkaliphile
30273	positive	optimum	7

Physiology and metabolism

spore formation

@ref	spore formation	confidence
30273	yes
69480	yes	94.602

halophily

@ref	salt	growth	tested relation	concentration	halophily level	confidence
30273	NaCl	positive	growth	0-25 %
30273	NaCl	positive	optimum	1-3 %
69480					non-halophilic	95.966

observation

@ref	observation
30273	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
30273	22599	arabinose	+	carbon source
30273	17057	cellobiose	+	carbon source
30273	28757	fructose	+	carbon source
30273	28260	galactose	+	carbon source
30273	17234	glucose	+	carbon source
30273	29864	mannitol	+	carbon source
30273	37684	mannose	+	carbon source
30273	28053	melibiose	+	carbon source
30273	16634	raffinose	+	carbon source
30273	17992	sucrose	+	carbon source
30273	27082	trehalose	+	carbon source
30273	53424	tween 20	+	carbon source
30273	53423	tween 40	+	carbon source
30273	53426	tween 80	+	carbon source
30273	18222	xylose	+	carbon source

enzymes

@ref	value	activity	ec
30273	catalase	+	1.11.1.6
30273	urease	+	3.5.1.5

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
17693	mangrove soil	Hainan province, Wenchang, Qinglan Harbour	China	CHN	Asia
67770	Composite mangrove soil in Qinglan Harbour	Wenchang, Hainan Province	China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

taxonmaps

@ref: 69479
File name: preview.99_1963.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_1101;99_1963&stattab=map
Last taxonomy: Streptomyces
16S sequence: HQ660227
Sequence Identity:
Total samples: 24
soil counts: 17
aquatic counts: 1
animal counts: 4
plant counts: 2

Safety information

risk assessment

@ref: 17693
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 17693
description: Streptomyces qinglanensis strain 172205 16S ribosomal RNA gene, partial sequence
accession: HQ660227
length: 1487
database: ena
NCBI tax ID: 943816

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Streptomyces qinglanensis strain CGMCC 4.6825	943816.5	wgs	patric	943816
66792	Streptomyces qinglanensis CGMCC 4.6825	2675903055	draft	img	943816
67770	Streptomyces qinglanensis CGMCC 4.6825	GCA_900111245	scaffold	ncbi	943816
67770	Streptomyces qinglanensis 172205	GCA_003265665	scaffold	ncbi	943816

GC content

@ref	GC-content	method
17693	70.33	high performance liquid chromatography (HPLC)
30273	70.33
67770	72.7	genome sequence analysis

External links

@ref: 17693

culture collection no.: DSM 42035, CGMCC 4.6825, JCM 19680

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/869477
20218	http://www.straininfo.net/strains/869476

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	21515699	Streptomyces qinglanensis sp. nov., isolated from mangrove sediment.	Hu H, Lin HP, Xie Q, Li L, Xie XQ, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.032201-0	2011	Bacterial Typing Techniques, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis	Genetics
Phylogeny	24803237	Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.	Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0180-x	2014	Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Hot Springs/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/classification/genetics/isolation & purification, Vitamin K 2/analysis	Genetics
Enzymology	25353335	PreQ0 base, an unusual metabolite with anti-cancer activity from Streptomyces qinglanensis 172205.	Xu D, Ma M, Liu Y, Zhou T, Wang K, Deng Z, Hong K	Anticancer Agents Med Chem	10.2174/1871520614666141027144653	2015	Antineoplastic Agents/chemistry/isolation & purification/pharmacology, Cell Proliferation/drug effects, Computational Biology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, HeLa Cells, Hep G2 Cells, Humans, Molecular Structure, Pyrimidinones/chemistry/isolation & purification/pharmacology, Pyrroles/chemistry/isolation & purification/pharmacology, Streptomyces/chemistry, Structure-Activity Relationship	Phylogeny
Phylogeny	25863667	Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil.	Ser HL, Zainal N, Palanisamy UD, Goh BH, Yin WF, Chan KG, Lee LH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0431-5	2015	Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis, Wetlands	Genetics
Genetics	25895087	Genotype-driven isolation of enterocin with novel bioactivities from mangrove-derived Streptomyces qinglanensis 172205.	Xu DB, Ma M, Deng ZX, Hong K	Appl Microbiol Biotechnol	10.1007/s00253-015-6574-5	2015	Amyloid beta-Peptides/antagonists & inhibitors, Antineoplastic Agents/metabolism, Biosynthetic Pathways/genetics, Bridged-Ring Compounds/isolation & purification/metabolism, Cell Survival/drug effects, Environmental Microbiology, Genotype, HeLa Cells, Hep G2 Cells, Humans, Streptomyces/genetics/isolation & purification/metabolism, Tandem Mass Spectrometry	Phylogeny
Phylogeny	27580743	Streptomyces litoralis sp. nov., isolated from a salt water beach.	Ma GQ, Xia ZF, Zhang Y, Wan CX, Luo XX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001468	2016	Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome
Phylogeny	30427301	Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.	Li L, Wang J, Zhou YJ, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003109	2018	Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, Porifera/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome
Pathogenicity	32414163	Bioactive Molecules from Mangrove Streptomyces qinglanensis 172205.	Xu D, Tian E, Kong F, Hong K	Mar Drugs	10.3390/md18050255	2020	Antineoplastic Agents/chemistry/pharmacology, Cell Line, Tumor/drug effects, China, HeLa Cells/drug effects, Humans, MCF-7 Cells/drug effects, Oceans and Seas, Soil Microbiology, Streptomyces/chemistry, Structure-Activity Relationship, *Wetlands
Phylogeny	32821032	Streptomyces lycii sp. nov., an endogenous actinomycete isolated from Lycium ruthenicum.	Ma L, Zeng H, Xia Z, Luo X, Zhang L, Wan C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004372	2020	Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lycium/microbiology, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome
Phylogeny	34752211	Streptomyces spirodelae sp. nov., isolated from duckweed.	Saimee Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005106	2021	Araceae/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome
Phylogeny	35320067	Streptomyces gobiensis sp. nov., an antimicrobial producing actinobacterium isolated from soil under black Gobi rocks.	Wen Y, Zhang G, Bahadur A, Liu Y, Zhang Z, Chen T, Liu G, Zhang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005318	2022	Actinobacteria/genetics, Anti-Infective Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed	ID_cross_reference
17693	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42035)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-42035
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
26614			10.1099/ijs.0.032201-0			21515699
30273	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information		28776041	26614
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)