We are hiring!

Strain identifier

BacDive ID: 16492

Type strain: Yes

Species: Streptomyces qinglanensis

Strain Designation: 172205

Strain history: CGMCC 4.6825 <-- H. Hu et al. 172205.

NCBI tax ID(s): 943816 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 17693

BacDive-ID: 16492

DSM-Number: 42035

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, ovoid-shaped

description: Streptomyces qinglanensis 172205 is a spore-forming, mesophilic, ovoid-shaped bacterium that was isolated from mangrove soil.

NCBI tax id

  • NCBI tax id: 943816
  • Matching level: species

strain history

doi: 10.13145/bacdive16492.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces qinglanensis
  • full scientific name: Streptomyces qinglanensis Hu et al. 2012

@ref: 17693

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces qinglanensis

full scientific name: Streptomyces qinglanensis Hu et al. 2012 emend. Nouioui et al. 2018

strain designation: 172205

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapegram stainconfidence
302730.5-1.0 µm0.3-0.7 µmovoid-shaped
69480positive95.321

pigmentation

  • @ref: 30273
  • production: no

multimedia

  • @ref: 17693
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42035.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17693GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17693STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
17693ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17693positivegrowth28mesophilic
30273positivegrowth15-37
30273positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30273positivegrowth07-10alkaliphile
30273positiveoptimum7

Physiology and metabolism

spore formation

@refspore formationconfidence
30273yes
69480yes94.602

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
30273NaClpositivegrowth0-25 %
30273NaClpositiveoptimum1-3 %
69480non-halophilic95.966

observation

@refobservation
30273aggregates in chains
67770quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3027322599arabinose+carbon source
3027317057cellobiose+carbon source
3027328757fructose+carbon source
3027328260galactose+carbon source
3027317234glucose+carbon source
3027329864mannitol+carbon source
3027337684mannose+carbon source
3027328053melibiose+carbon source
3027316634raffinose+carbon source
3027317992sucrose+carbon source
3027327082trehalose+carbon source
3027353424tween 20+carbon source
3027353423tween 40+carbon source
3027353426tween 80+carbon source
3027318222xylose+carbon source

enzymes

@refvalueactivityec
30273catalase+1.11.1.6
30273urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17693mangrove soilHainan province, Wenchang, Qinglan HarbourChinaCHNAsia
67770Composite mangrove soil in Qinglan HarbourWenchang, Hainan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1963.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_1101;99_1963&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: HQ660227
  • Sequence Identity:
  • Total samples: 24
  • soil counts: 17
  • aquatic counts: 1
  • animal counts: 4
  • plant counts: 2

Safety information

risk assessment

  • @ref: 17693
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17693
  • description: Streptomyces qinglanensis strain 172205 16S ribosomal RNA gene, partial sequence
  • accession: HQ660227
  • length: 1487
  • database: ena
  • NCBI tax ID: 943816

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces qinglanensis strain CGMCC 4.6825943816.5wgspatric943816
66792Streptomyces qinglanensis CGMCC 4.68252675903055draftimg943816
67770Streptomyces qinglanensis CGMCC 4.6825GCA_900111245scaffoldncbi943816
67770Streptomyces qinglanensis 172205GCA_003265665scaffoldncbi943816

GC content

@refGC-contentmethod
1769370.33high performance liquid chromatography (HPLC)
3027370.33
6777072.7genome sequence analysis

External links

@ref: 17693

culture collection no.: DSM 42035, CGMCC 4.6825, JCM 19680

straininfo link

@refpassport
20218http://www.straininfo.net/strains/869477
20218http://www.straininfo.net/strains/869476

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21515699Streptomyces qinglanensis sp. nov., isolated from mangrove sediment.Hu H, Lin HP, Xie Q, Li L, Xie XQ, Hong KInt J Syst Evol Microbiol10.1099/ijs.0.032201-02011Bacterial Typing Techniques, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysisGenetics
Phylogeny24803237Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJAntonie Van Leeuwenhoek10.1007/s10482-014-0180-x2014Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification, Vitamin K 2/analysisGenetics
Enzymology25353335PreQ0 base, an unusual metabolite with anti-cancer activity from Streptomyces qinglanensis 172205.Xu D, Ma M, Liu Y, Zhou T, Wang K, Deng Z, Hong KAnticancer Agents Med Chem10.2174/18715206146661410271446532015Antineoplastic Agents/chemistry/isolation & purification/*pharmacology, Cell Proliferation/drug effects, Computational Biology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, HeLa Cells, Hep G2 Cells, Humans, Molecular Structure, Pyrimidinones/chemistry/isolation & purification/*pharmacology, Pyrroles/chemistry/isolation & purification/*pharmacology, Streptomyces/*chemistry, Structure-Activity RelationshipPhylogeny
Phylogeny25863667Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil.Ser HL, Zainal N, Palanisamy UD, Goh BH, Yin WF, Chan KG, Lee LHAntonie Van Leeuwenhoek10.1007/s10482-015-0431-52015Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis, WetlandsGenetics
Genetics25895087Genotype-driven isolation of enterocin with novel bioactivities from mangrove-derived Streptomyces qinglanensis 172205.Xu DB, Ma M, Deng ZX, Hong KAppl Microbiol Biotechnol10.1007/s00253-015-6574-52015Amyloid beta-Peptides/antagonists & inhibitors, Antineoplastic Agents/metabolism, Biosynthetic Pathways/*genetics, Bridged-Ring Compounds/isolation & purification/metabolism, Cell Survival/drug effects, Environmental Microbiology, *Genotype, HeLa Cells, Hep G2 Cells, Humans, Streptomyces/*genetics/isolation & purification/*metabolism, Tandem Mass SpectrometryPhylogeny
Phylogeny27580743Streptomyces litoralis sp. nov., isolated from a salt water beach.Ma GQ, Xia ZF, Zhang Y, Wan CX, Luo XX, Zhang LLInt J Syst Evol Microbiol10.1099/ijsem.0.0014682016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30427301Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.Li L, Wang J, Zhou YJ, Lin HW, Lu YHInt J Syst Evol Microbiol10.1099/ijsem.0.0031092018Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Pathogenicity32414163Bioactive Molecules from Mangrove Streptomyces qinglanensis 172205.Xu D, Tian E, Kong F, Hong KMar Drugs10.3390/md180502552020Antineoplastic Agents/chemistry/*pharmacology, Cell Line, Tumor/*drug effects, China, HeLa Cells/drug effects, Humans, MCF-7 Cells/drug effects, Oceans and Seas, *Soil Microbiology, Streptomyces/*chemistry, Structure-Activity Relationship, *Wetlands
Phylogeny32821032Streptomyces lycii sp. nov., an endogenous actinomycete isolated from Lycium ruthenicum.Ma L, Zeng H, Xia Z, Luo X, Zhang L, Wan CInt J Syst Evol Microbiol10.1099/ijsem.0.0043722020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lycium/*microbiology, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34752211Streptomyces spirodelae sp. nov., isolated from duckweed.Saimee Y, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0051062021*Araceae/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35320067Streptomyces gobiensis sp. nov., an antimicrobial producing actinobacterium isolated from soil under black Gobi rocks.Wen Y, Zhang G, Bahadur A, Liu Y, Zhang Z, Chen T, Liu G, Zhang WInt J Syst Evol Microbiol10.1099/ijsem.0.0053182022*Actinobacteria/genetics, *Anti-Infective Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *StreptomycesTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17693Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42035)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42035
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2661410.1099/ijs.0.032201-021515699
30273Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126614
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)