Strain identifier
BacDive ID: 16492
Type strain:
Species: Streptomyces qinglanensis
Strain Designation: 172205
Strain history: CGMCC 4.6825 <-- H. Hu et al. 172205.
NCBI tax ID(s): 943816 (species)
General
@ref: 17693
BacDive-ID: 16492
DSM-Number: 42035
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, ovoid-shaped
description: Streptomyces qinglanensis 172205 is a spore-forming, mesophilic, ovoid-shaped bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 943816
- Matching level: species
strain history
@ref | history |
---|---|
17693 | <- K. Hong, Haikou City, China; 172205 <- X. Xie |
67770 | CGMCC 4.6825 <-- H. Hu et al. 172205. |
doi: 10.13145/bacdive16492.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces qinglanensis
- full scientific name: Streptomyces qinglanensis Hu et al. 2012
@ref: 17693
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces qinglanensis
full scientific name: Streptomyces qinglanensis Hu et al. 2012 emend. Nouioui et al. 2018
strain designation: 172205
type strain: yes
Morphology
cell morphology
@ref | cell length | cell width | cell shape | motility | confidence | gram stain |
---|---|---|---|---|---|---|
30273 | 0.5-1.0 µm | 0.3-0.7 µm | ovoid-shaped | |||
69480 | no | 94.378 | ||||
69480 | 100 | positive |
pigmentation
- @ref: 30273
- production: no
multimedia
- @ref: 17693
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42035.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
17693 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
17693 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
17693 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17693 | positive | growth | 28 | mesophilic |
30273 | positive | growth | 15-37 | |
30273 | positive | optimum | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30273 | positive | growth | 07-10 | alkaliphile |
30273 | positive | optimum | 7 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
30273 | yes | |
69481 | yes | 100 |
69480 | yes | 100 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30273 | NaCl | positive | growth | 0-25 % |
30273 | NaCl | positive | optimum | 1-3 % |
observation
@ref | observation |
---|---|
30273 | aggregates in chains |
67770 | quinones: MK-9(H6), MK-9(H8) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30273 | 22599 | arabinose | + | carbon source |
30273 | 17057 | cellobiose | + | carbon source |
30273 | 28757 | fructose | + | carbon source |
30273 | 28260 | galactose | + | carbon source |
30273 | 17234 | glucose | + | carbon source |
30273 | 29864 | mannitol | + | carbon source |
30273 | 37684 | mannose | + | carbon source |
30273 | 28053 | melibiose | + | carbon source |
30273 | 16634 | raffinose | + | carbon source |
30273 | 17992 | sucrose | + | carbon source |
30273 | 27082 | trehalose | + | carbon source |
30273 | 53424 | tween 20 | + | carbon source |
30273 | 53423 | tween 40 | + | carbon source |
30273 | 53426 | tween 80 | + | carbon source |
30273 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30273 | catalase | + | 1.11.1.6 |
30273 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
17693 | mangrove soil | Hainan province, Wenchang, Qinglan Harbour | China | CHN | Asia |
67770 | Composite mangrove soil in Qinglan Harbour | Wenchang, Hainan Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Mangrove |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_1963.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_1101;99_1963&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: HQ660227
- Sequence Identity:
- Total samples: 24
- soil counts: 17
- aquatic counts: 1
- animal counts: 4
- plant counts: 2
Safety information
risk assessment
- @ref: 17693
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17693
- description: Streptomyces qinglanensis strain 172205 16S ribosomal RNA gene, partial sequence
- accession: HQ660227
- length: 1487
- database: ena
- NCBI tax ID: 943816
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces qinglanensis strain CGMCC 4.6825 | 943816.5 | wgs | patric | 943816 |
66792 | Streptomyces qinglanensis CGMCC 4.6825 | 2675903055 | draft | img | 943816 |
67770 | Streptomyces qinglanensis CGMCC 4.6825 | GCA_900111245 | scaffold | ncbi | 943816 |
67770 | Streptomyces qinglanensis 172205 | GCA_003265665 | scaffold | ncbi | 943816 |
GC content
@ref | GC-content | method |
---|---|---|
17693 | 70.33 | high performance liquid chromatography (HPLC) |
30273 | 70.33 | |
67770 | 72.7 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 93.738 | no |
flagellated | no | 98.035 | no |
gram-positive | yes | 88.89 | no |
anaerobic | no | 98.957 | no |
halophile | no | 75.575 | no |
spore-forming | yes | 91.26 | no |
glucose-util | yes | 88.643 | no |
aerobic | yes | 92.444 | no |
thermophile | no | 93.254 | yes |
glucose-ferment | no | 88.436 | no |
External links
@ref: 17693
culture collection no.: DSM 42035, CGMCC 4.6825, JCM 19680
straininfo link
- @ref: 85525
- straininfo: 401532
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21515699 | Streptomyces qinglanensis sp. nov., isolated from mangrove sediment. | Hu H, Lin HP, Xie Q, Li L, Xie XQ, Hong K | Int J Syst Evol Microbiol | 10.1099/ijs.0.032201-0 | 2011 | Bacterial Typing Techniques, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis | Genetics |
Phylogeny | 24803237 | Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment. | Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0180-x | 2014 | Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification, Vitamin K 2/analysis | Genetics |
Enzymology | 25353335 | PreQ0 base, an unusual metabolite with anti-cancer activity from Streptomyces qinglanensis 172205. | Xu D, Ma M, Liu Y, Zhou T, Wang K, Deng Z, Hong K | Anticancer Agents Med Chem | 10.2174/1871520614666141027144653 | 2015 | Antineoplastic Agents/chemistry/isolation & purification/*pharmacology, Cell Proliferation/drug effects, Computational Biology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, HeLa Cells, Hep G2 Cells, Humans, Molecular Structure, Pyrimidinones/chemistry/isolation & purification/*pharmacology, Pyrroles/chemistry/isolation & purification/*pharmacology, Streptomyces/*chemistry, Structure-Activity Relationship | Phylogeny |
Phylogeny | 25863667 | Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil. | Ser HL, Zainal N, Palanisamy UD, Goh BH, Yin WF, Chan KG, Lee LH | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0431-5 | 2015 | Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis, Wetlands | Genetics |
Genetics | 25895087 | Genotype-driven isolation of enterocin with novel bioactivities from mangrove-derived Streptomyces qinglanensis 172205. | Xu DB, Ma M, Deng ZX, Hong K | Appl Microbiol Biotechnol | 10.1007/s00253-015-6574-5 | 2015 | Amyloid beta-Peptides/antagonists & inhibitors, Antineoplastic Agents/metabolism, Biosynthetic Pathways/*genetics, Bridged-Ring Compounds/isolation & purification/metabolism, Cell Survival/drug effects, Environmental Microbiology, *Genotype, HeLa Cells, Hep G2 Cells, Humans, Streptomyces/*genetics/isolation & purification/*metabolism, Tandem Mass Spectrometry | Phylogeny |
Phylogeny | 27580743 | Streptomyces litoralis sp. nov., isolated from a salt water beach. | Ma GQ, Xia ZF, Zhang Y, Wan CX, Luo XX, Zhang LL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001468 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 30427301 | Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges. | Li L, Wang J, Zhou YJ, Lin HW, Lu YH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003109 | 2018 | Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Pathogenicity | 32414163 | Bioactive Molecules from Mangrove Streptomyces qinglanensis 172205. | Xu D, Tian E, Kong F, Hong K | Mar Drugs | 10.3390/md18050255 | 2020 | Antineoplastic Agents/chemistry/*pharmacology, Cell Line, Tumor/*drug effects, China, HeLa Cells/drug effects, Humans, MCF-7 Cells/drug effects, Oceans and Seas, *Soil Microbiology, Streptomyces/*chemistry, Structure-Activity Relationship, *Wetlands | |
Phylogeny | 32821032 | Streptomyces lycii sp. nov., an endogenous actinomycete isolated from Lycium ruthenicum. | Ma L, Zeng H, Xia Z, Luo X, Zhang L, Wan C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004372 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lycium/*microbiology, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 34752211 | Streptomyces spirodelae sp. nov., isolated from duckweed. | Saimee Y, Duangmal K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005106 | 2021 | *Araceae/microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 35320067 | Streptomyces gobiensis sp. nov., an antimicrobial producing actinobacterium isolated from soil under black Gobi rocks. | Wen Y, Zhang G, Bahadur A, Liu Y, Zhang Z, Chen T, Liu G, Zhang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005318 | 2022 | *Actinobacteria/genetics, *Anti-Infective Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
17693 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42035) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42035 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
30273 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26614 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
85525 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401532.1 | StrainInfo: A central database for resolving microbial strain identifiers |