Strain identifier
BacDive ID: 16488
Type strain:
Species: Streptomyces shenzhenensis
Strain Designation: 172115
Strain history: <- K. Hong, Chinese Acad. Tropical Agricult. Sci., Haikou, China; 172115 <- X. Xie
NCBI tax ID(s): 943815 (species)
General
@ref: 17692
BacDive-ID: 16488
DSM-Number: 42034
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces shenzhenensis 172115 is a mesophilic bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 943815
- Matching level: species
strain history
- @ref: 17692
- history: <- K. Hong, Chinese Acad. Tropical Agricult. Sci., Haikou, China; 172115 <- X. Xie
doi: 10.13145/bacdive16488.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces shenzhenensis
- full scientific name: Streptomyces shenzhenensis Hu et al. 2012
@ref: 17692
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces shenzhenensis
full scientific name: Streptomyces shenzhenensis Hu et al. 2012
strain designation: 172115
type strain: yes
Morphology
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
17692 | https://www.dsmz.de/microorganisms/photos/DSM_42034.jpg | Medium 65 28°C | © Leibniz-Institut DSMZ |
17692 | https://www.dsmz.de/microorganisms/photos/DSM_42034.jpg | Medium 65 28°C | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
Culture and growth conditions
culture medium
- @ref: 17692
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 17692
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17692
- sample type: mangrove soil
- geographic location: Shenzhen
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Mangrove |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 17692
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17692
- description: Streptomyces shenzhenensis strain 172115 16S ribosomal RNA gene, partial sequence
- accession: HQ660226
- length: 1485
- database: ena
- NCBI tax ID: 943815
Genome sequences
- @ref: 66792
- description: Streptomyces shenzhenensis DSM 42034
- accession: GCA_021462265
- assembly level: contig
- database: ncbi
- NCBI tax ID: 943815
GC content
- @ref: 17692
- GC-content: 75
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.223 | no |
gram-positive | yes | 86.757 | no |
anaerobic | no | 98.851 | no |
aerobic | yes | 92.698 | no |
halophile | no | 94.606 | no |
spore-forming | yes | 93.928 | no |
motile | no | 94.629 | no |
glucose-ferment | no | 89.061 | no |
thermophile | no | 98.815 | yes |
glucose-util | yes | 87.965 | no |
External links
@ref: 17692
culture collection no.: DSM 42034, CCTCC AA 2011001
straininfo link
- @ref: 85522
- straininfo: 400769
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21732032 | Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment. | Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong K | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9618-6 | 2011 | China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification | Genetics |
Phylogeny | 24478213 | Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.055210-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 24515726 | Streptomyces jiujiangensis sp. nov., isolated from soil in South China. | Zhang BH, Cheng J, Li L, Zhang YG, Wang HF, Li HQ, Yang JY, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0132-5 | 2014 | Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
Phylogeny | 26531686 | Streptomyces hyaluromycini sp. nov., isolated from a tunicate (Molgula manhattensis). | Harunari E, Hamada M, Shibata C, Tamura T, Komaki H, Imada C, Igarashi Y | J Antibiot (Tokyo) | 10.1038/ja.2015.110 | 2015 | Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Urochordata/*microbiology, Vitamin K 2/chemistry | Transcriptome |
Phylogeny | 27902221 | Streptomyces fuscichromogenes sp. nov., an actinomycete from soil. | Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001573 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 35597859 | Streptomyces spinosus sp. nov. and Streptomyces shenzhenensis subsp. oryzicola subsp. nov. endophytic actinobacteria isolated from Jasmine rice and their genome mining for potential as antibiotic producers and plant growth promoters. | Kaewkla O, Sukpanoa S, Suriyachadkun C, Chamroensaksi N, Chumroenphat T, Franco CMM | Antonie Van Leeuwenhoek | 10.1007/s10482-022-01741-9 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17692 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42034) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42034 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
85522 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400769.1 | StrainInfo: A central database for resolving microbial strain identifiers |