Strain identifier

BacDive ID: 16488

Type strain: Yes

Species: Streptomyces shenzhenensis

Strain Designation: 172115

Strain history: <- K. Hong, Chinese Acad. Tropical Agricult. Sci., Haikou, China; 172115 <- X. Xie

NCBI tax ID(s): 943815 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17692

BacDive-ID: 16488

DSM-Number: 42034

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces shenzhenensis 172115 is a mesophilic bacterium that was isolated from mangrove soil.

NCBI tax id

  • NCBI tax id: 943815
  • Matching level: species

strain history

  • @ref: 17692
  • history: <- K. Hong, Chinese Acad. Tropical Agricult. Sci., Haikou, China; 172115 <- X. Xie

doi: 10.13145/bacdive16488.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces shenzhenensis
  • full scientific name: Streptomyces shenzhenensis Hu et al. 2012

@ref: 17692

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces shenzhenensis

full scientific name: Streptomyces shenzhenensis Hu et al. 2012

strain designation: 172115

type strain: yes

Morphology

multimedia

@refmultimedia contentcaptionintellectual property rights
17692https://www.dsmz.de/microorganisms/photos/DSM_42034.jpgMedium 65 28°C© Leibniz-Institut DSMZ
17692https://www.dsmz.de/microorganisms/photos/DSM_42034.jpgMedium 65 28°CLeibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

  • @ref: 17692
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 17692
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 17692
  • sample type: mangrove soil
  • geographic location: Shenzhen
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 17692
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17692
  • description: Streptomyces shenzhenensis strain 172115 16S ribosomal RNA gene, partial sequence
  • accession: HQ660226
  • length: 1485
  • database: ena
  • NCBI tax ID: 943815

Genome sequences

  • @ref: 66792
  • description: Streptomyces shenzhenensis DSM 42034
  • accession: GCA_021462265
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 943815

GC content

  • @ref: 17692
  • GC-content: 75
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.223no
gram-positiveyes86.757no
anaerobicno98.851no
aerobicyes92.698no
halophileno94.606no
spore-formingyes93.928no
motileno94.629no
glucose-fermentno89.061no
thermophileno98.815yes
glucose-utilyes87.965no

External links

@ref: 17692

culture collection no.: DSM 42034, CCTCC AA 2011001

straininfo link

  • @ref: 85522
  • straininfo: 400769

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21732032Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment.Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong KAntonie Van Leeuwenhoek10.1007/s10482-011-9618-62011China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purificationGenetics
Phylogeny24478213Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.055210-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24515726Streptomyces jiujiangensis sp. nov., isolated from soil in South China.Zhang BH, Cheng J, Li L, Zhang YG, Wang HF, Li HQ, Yang JY, Li WJAntonie Van Leeuwenhoek10.1007/s10482-014-0132-52014Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny26531686Streptomyces hyaluromycini sp. nov., isolated from a tunicate (Molgula manhattensis).Harunari E, Hamada M, Shibata C, Tamura T, Komaki H, Imada C, Igarashi YJ Antibiot (Tokyo)10.1038/ja.2015.1102015Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Urochordata/*microbiology, Vitamin K 2/chemistryTranscriptome
Phylogeny27902221Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang JInt J Syst Evol Microbiol10.1099/ijsem.0.0015732017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35597859Streptomyces spinosus sp. nov. and Streptomyces shenzhenensis subsp. oryzicola subsp. nov. endophytic actinobacteria isolated from Jasmine rice and their genome mining for potential as antibiotic producers and plant growth promoters.Kaewkla O, Sukpanoa S, Suriyachadkun C, Chamroensaksi N, Chumroenphat T, Franco CMMAntonie Van Leeuwenhoek10.1007/s10482-022-01741-92022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17692Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42034)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42034
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
85522Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400769.1StrainInfo: A central database for resolving microbial strain identifiers