Strain identifier

BacDive ID: 16486

Type strain: Yes

Species: Streptomyces sundarbansensis

Strain Designation: MS1/7

Strain history: MTCC 10621 <-- M. Arumugam et al. MS1/7.

NCBI tax ID(s): 265730 (species)

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General

@ref: 17336

BacDive-ID: 16486

DSM-Number: 42019

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces sundarbansensis MS1/7 is a mesophilic bacterium that builds an aerial mycelium and was isolated from mangrove forest soil.

NCBI tax id

  • NCBI tax id: 265730
  • Matching level: species

strain history

@refhistory
17336<- J. Mukherjee, Jadavpur Univ., Kolkata, India; MTCC 5272 <- M. Saha
67770MTCC 10621 <-- M. Arumugam et al. MS1/7.

doi: 10.13145/bacdive16486.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sundarbansensis
  • full scientific name: Streptomyces sundarbansensis Arumugam et al. 2011

@ref: 17336

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sundarbansensis

full scientific name: Streptomyces sundarbansensis Arumugam et al. 2011

strain designation: MS1/7

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69322ColourlessISP 6
69322Brown beige (1011)ISP 5
69322Grey white (9002)suter without tyrosine
69322Ivory (1014)ISP 2
69322Olive brown (8008)ISP 7
69322Terra brown (8028)ISP 4

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69322yesAerial myceliumIvory (1014)ISP 2
69322yesAerial myceliumOyster white (1013)ISP 3
69322yesAerial myceliumCream (9001)ISP 4
69322yesAerial myceliumStone grey (7030)ISP 5
69322yesAerial myceliumISP 6
69322yesAerial myceliumTelegrey 4 (7047)ISP 7
69322yesAerial myceliumTraffic white (9016)suter with tyrosine
69322yesAerial myceliumSilk grey (7044)suter without tyrosine

pigmentation

@refproductionnamecolor
69322noMelanin
69322yessoluble pigmentIvory (1014), light ivory (1015)

multimedia

@refmultimedia contentcaptionintellectual property rights
69322DSM_42019_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69322DSM_42019_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17336ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
17336GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17336positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 17336
  • compound: 2 allyloxyphenol

halophily

  • @ref: 69322
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6932222599arabinose-growth
6932262968cellulose-growth
6932228757fructose+/-growth
6932217234glucose+growth
6932217268inositol-growth
6932237684mannose+growth
6932216634raffinose-growth
6932226546rhamnose-growth
6932217992sucrose-growth
6932218222xylose+growth
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69322---+--+-+++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69322+++-++/-+/-++++-+/--+/-----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
17336mangrove forest soilBay of Bengal, Lothian Island of the Sundarbans mangrove forest (20° 50' N 88°19' E)IndiaINDAsia20.833388.3167
67770Sediments of the Sundarbans mangrove forestIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY550275
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

  • @ref: 17336
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17336
  • description: Streptomyces sundarbansensis strain MS1/7 16S ribosomal RNA gene, partial sequence
  • accession: AY550275
  • length: 1490
  • database: ena
  • NCBI tax ID: 265730

GC content

  • @ref: 17336
  • GC-content: 71.9
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 17336

culture collection no.: DSM 42019, MTCC 10621, JCM 19250

straininfo link

  • @ref: 85520
  • straininfo: 397923

literature

  • topic: Phylogeny
  • Pubmed-ID: 21148669
  • title: Streptomyces sundarbansensis sp. nov., an actinomycete that produces 2-allyloxyphenol.
  • authors: Arumugam M, Mitra A, Pramanik A, Saha M, Gachhui R, Mukherjee J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.028258-0
  • year: 2010
  • mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Phenols/*metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
17336Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42019)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42019
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69322Wink, J.https://cdn.dsmz.de/wink/DSM%2042019.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85520Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397923.1StrainInfo: A central database for resolving microbial strain identifiers