Strain identifier
BacDive ID: 16483
Type strain: 
Species: Streptomyces rubrus
Strain Designation: Sp080513KE-34
Strain history: <- T. Tamura, NBRC; NBRC 105046 <- S. T. Khan; Sp080513KE-34
NCBI tax ID(s): 565074 (species)
General
@ref: 17546
BacDive-ID: 16483
DSM-Number: 42030
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces rubrus Sp080513KE-34 is a mesophilic bacterium that was isolated from marine sponge, Haliclona sp..
NCBI tax id
- NCBI tax id: 565074
- Matching level: species
strain history
- @ref: 17546
- history: <- T. Tamura, NBRC; NBRC 105046 <- S. T. Khan; Sp080513KE-34
doi: 10.13145/bacdive16483.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces rubrus
- full scientific name: Streptomyces rubrus corrig. Khan et al. 2011
synonyms
- @ref: 20215
- synonym: Streptomyces rubrum
@ref: 17546
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces rubrus
full scientific name: Streptomyces rubrus Khan et al. 2011
strain designation: Sp080513KE-34
type strain: yes
Culture and growth conditions
culture medium
- @ref: 17546
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 17546
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17546
- sample type: marine sponge, Haliclona sp.
- host species: Haliclona
- geographic location: Chiba, Tateyama
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Invertebrates (Other) | #Porifera (Sponges) |
Safety information
risk assessment
- @ref: 17546
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17546
- description: Streptomyces rubrus gene for 16S rRNA, partial sequence
- accession: AB473557
- length: 1475
- database: ena
- NCBI tax ID: 565074
GC content
- @ref: 17546
- GC-content: 75
- method: high performance liquid chromatography (HPLC)
External links
@ref: 17546
culture collection no.: DSM 42030, NBRC 105046
straininfo link
- @ref: 85518
- straininfo: 400245
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17546 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42030) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42030 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 85518 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400245.1 | StrainInfo: A central database for resolving microbial strain identifiers |