Strain identifier
BacDive ID: 164822
Type strain: 
Species: Clostridium perfringens
Strain history: ATCC 3624 <-- I. C. Hall.
NCBI tax ID(s): 1502 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164822
keywords: 16S sequence, Bacteria, mesophilic
description: Clostridium perfringens JCM 3816 is a mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
strain history
- @ref: 67770
- history: ATCC 3624 <-- I. C. Hall.
doi: 10.13145/bacdive164822.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
enzymes
- @ref: 67770
- value: Clostridium perfringens alpha-toxin
- ec: 3.1.4.3
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_335.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_235;97_257;98_286;99_335&stattab=map
- Last taxonomy: Clostridium perfringens subclade
- 16S sequence: AB566417
- Sequence Identity:
- Total samples: 88326
- soil counts: 3063
- aquatic counts: 8762
- animal counts: 75654
- plant counts: 847
Sequence information
16S sequences
- @ref: 67770
- description: Clostridium perfringens gene for 16S ribosomal RNA, partial sequence
- accession: AB566417
- length: 1474
- database: ena
- NCBI tax ID: 1502
External links
@ref: 67770
culture collection no.: JCM 3816, ATCC 3624, BCRC 13019
straininfo link
- @ref: 114252
- straininfo: 310940
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Cultivation | 2864896 | Development of a minimal medium for Clostridium perfringens by using an anaerobic chemostat. | Goldner SB, Solberg M, Post LS | Appl Environ Microbiol | 10.1128/aem.50.2.202-206.1985 | 1985 | Amino Acids/analysis/pharmacology, Anaerobiosis, Clostridium perfringens/*growth & development, Culture Media, Nucleotides/analysis/pharmacology, Vitamins/analysis/pharmacology | |
| Enzymology | 2876679 | Enterotoxin synthesis by nonsporulating cultures of Clostridium perfringens. | Goldner SB, Solberg M, Jones S, Post LS | Appl Environ Microbiol | 10.1128/aem.52.3.407-412.1986 | 1986 | Clostridium perfringens/*metabolism/physiology/ultrastructure, Electrophoresis, Polyacrylamide Gel, Enterotoxins/*biosynthesis, Microscopy, Electron, Spores, Bacterial | Metabolism |
| Enzymology | 6286597 | Partial purification and properties of phosphatidylserine synthase from Clostridium perfringens. | Cousminer JJ, Fischl AS, Carman GM | J Bacteriol | 10.1128/jb.151.3.1372-1379.1982 | 1982 | CDPdiacylglycerol-Serine O-Phosphatidyltransferase/*isolation & purification/metabolism, Clostridium perfringens/*enzymology, Cytidine Diphosphate Diglycerides/metabolism, Hydrogen-Ion Concentration, Kinetics, Manganese/pharmacology, Octoxynol, Phosphotransferases/*isolation & purification, Polyethylene Glycols/pharmacology, Serine/metabolism, Temperature | Metabolism |
| 10684178 | Effect of avilamycin, tylosin and ionophore anticoccidials on Clostridium perfringens enterotoxaemia in chickens. | Vissiennon T, Kroger H, Kohler T, Kliche R | Berl Munch Tierarztl Wochenschr | 2000 | Animals, Anti-Bacterial Agents/therapeutic use, Antibiotic Prophylaxis/*veterinary, Chickens, Clostridium Infections/mortality/prevention & control/*veterinary, *Clostridium perfringens, Enterotoxemia/mortality/*prevention & control, Female, Male, Oligosaccharides/*therapeutic use, Poultry Diseases/microbiology/mortality/*prevention & control, Tylosin/*therapeutic use | |||
| 12540184 | Incidence of Clostridium perfringens in commercially produced cured raw meat product mixtures and behavior in cooked products during chilling and refrigerated storage. | Taormina PJ, Bartholomew GW, Dorsa WJ | J Food Prot | 10.4315/0362-028x-66.1.72 | 2003 | Animals, Cattle, Chickens, Clostridium perfringens/*growth & development, Colony Count, Microbial, Food Handling/*methods, Food Preservation/*methods, Food Preservatives/*pharmacology, Incidence, Meat Products/*microbiology, Sodium Nitrite/*pharmacology, Swine, Temperature, Time Factors, Vacuum | ||
| 16269799 | Construction of an alpha toxin gene knockout mutant of Clostridium perfringens type A by use of a mobile group II intron. | Chen Y, McClane BA, Fisher DJ, Rood JI, Gupta P | Appl Environ Microbiol | 10.1128/AEM.71.11.7542-7547.2005 | 2005 | Clostridium perfringens/*genetics, *Gene Deletion, Gene Targeting/methods, Genetic Techniques, Introns/*genetics, Mutagenesis, Insertional/*methods, Promoter Regions, Genetic, Type C Phospholipases/*genetics | ||
| Biotechnology | 21131083 | Antimicrobial activity of Satureja montana L. essential oil against Clostridium perfringens type A inoculated in mortadella-type sausages formulated with different levels of sodium nitrite. | de Oliveira TL, de Araujo Soares R, Ramos EM, das Gracas Cardoso M, Alves E, Piccoli RH | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2010.11.022 | 2010 | Anti-Infective Agents/chemistry/*pharmacology, Clostridium perfringens/*drug effects, *Food Microbiology, Food Preservation/*methods, Meat Products/*microbiology, Microbial Sensitivity Tests, Oils, Volatile/chemistry/*pharmacology, Satureja/*chemistry, Sodium Nitrite/*pharmacology | Pathogenicity |
| Metabolism | 32554714 | The Agr-Like Quorum-Sensing System Is Important for Clostridium perfringens Type A Strain ATCC 3624 To Cause Gas Gangrene in a Mouse Model. | Navarro MA, Li J, Beingesser J, McClane BA, Uzal FA | mSphere | 10.1128/mSphere.00500-20 | 2020 | Animals, Bacterial Proteins/*genetics, Clostridium perfringens/*genetics/*metabolism/pathogenicity, Disease Models, Animal, Female, Gas Gangrene/*microbiology, Gene Expression Regulation, Bacterial, Male, Mice, Mice, Inbred BALB C, Muscles/microbiology/pathology, Necrosis/microbiology, Quorum Sensing/*genetics/physiology, Signal Transduction, Virulence/genetics, Virulence Factors |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 114252 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID310940.1 |