Strain identifier
BacDive ID: 164807
Type strain:
Species: Vibrio fluvialis
Strain history: T. Shimada 1562-80.
NCBI tax ID(s): 676 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164807
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Vibrio fluvialis JCM 3745 is a mesophilic bacterium of the family Vibrionaceae.
NCBI tax id
- NCBI tax id: 676
- Matching level: species
strain history
- @ref: 67770
- history: T. Shimada 1562-80.
doi: 10.13145/bacdive164807.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio fluvialis
- full scientific name: Vibrio fluvialis Lee et al. 1981
synonyms
- @ref: 20215
- synonym: Allomonas enterica
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio fluvialis
full scientific name: Vibrio fluvialis Lee et al. 1981
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_418.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_347;99_418&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: LC420088
- Sequence Identity:
- Total samples: 3818
- soil counts: 168
- aquatic counts: 1720
- animal counts: 1806
- plant counts: 124
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio fluvialis JCM 3745 gene for 16S ribosomal RNA, partial sequence
- accession: LC420088
- length: 1475
- database: ena
- NCBI tax ID: 676
Genome sequences
- @ref: 66792
- description: Vibrio fluvialis JCM3745
- accession: GCA_021394415
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 676
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 86.779 | no |
gram-positive | no | 98.958 | no |
anaerobic | no | 97.588 | no |
aerobic | yes | 80.927 | no |
halophile | no | 50 | no |
spore-forming | no | 95.525 | no |
motile | yes | 91.761 | no |
glucose-ferment | yes | 87.053 | no |
thermophile | no | 99.42 | yes |
glucose-util | yes | 92.61 | no |
External links
@ref: 67770
culture collection no.: JCM 3745
straininfo link
- @ref: 114237
- straininfo: 64158
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
114237 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64158.1 |