Strain identifier

BacDive ID: 164786

Type strain: No

Species: Fusobacterium varium

Strain history: T. Shinjo Fn 521 (Biovar C) <-- H. Beerens 118.

NCBI tax ID(s): 856 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164786

keywords: 16S sequence, Bacteria, mesophilic

description: Fusobacterium varium JCM 3722 is a mesophilic bacterium that was isolated from Ovine pulmonary abscess.

NCBI tax id

  • NCBI tax id: 856
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Shinjo Fn 521 (Biovar C) <-- H. Beerens 118.

doi: 10.13145/bacdive164786.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Fusobacterium
  • species: Fusobacterium varium
  • full scientific name: Fusobacterium varium (Eggerth and Gagnon 1933) Moore and Holdeman 1969 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Fusobacterium pseudonecrophorum
    20215Bacteroides varius

@ref: 67770

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Fusobacterium

species: Fusobacterium varium

full scientific name: Fusobacterium varium (Eggerth and Gagnon 1933) Moore and Holdeman 1969

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Ovine pulmonary abscess

taxonmaps

  • @ref: 69479
  • File name: preview.99_1233.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_717;97_839;98_975;99_1233&stattab=map
  • Last taxonomy: Fusobacterium
  • 16S sequence: AB595132
  • Sequence Identity:
  • Total samples: 54826
  • soil counts: 1169
  • aquatic counts: 2796
  • animal counts: 50429
  • plant counts: 432

Sequence information

16S sequences

  • @ref: 67770
  • description: Fusobacterium varium gene for 16S ribosomal RNA, partial sequence, strain: JCM 3722
  • accession: AB595132
  • length: 1457
  • database: ena
  • NCBI tax ID: 856

External links

@ref: 67770

culture collection no.: JCM 3722, ATCC 51644, KCTC 15083

straininfo link

  • @ref: 114217
  • straininfo: 45308

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny2223600Recognition of biovar C of Fusobacterium necrophorum (Flugge) Moore and Holdeman as Fusobacterium pseudonecrophorum sp. nov., nom. rev. (ex Prevot 1940).Shinjo T, Hiraiwa K, Miyazato SInt J Syst Bacteriol10.1099/00207713-40-1-711990Animals, DNA, Bacterial/genetics, Fusobacterium Infections/microbiology, Fusobacterium necrophorum/*classification/genetics/metabolism/pathogenicity, Hemagglutination Tests, Liver Abscess/microbiology, Mice, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid, Species SpecificityMetabolism
Metabolism18793368Stimulation of epithelial cell matrix metalloproteinase (MMP-2, -9, -13) and interleukin-8 secretion by fusobacteria.Gursoy UK, Kononen E, Uitto VJOral Microbiol Immunol10.1111/j.1399-302X.2008.00453.x2008Blotting, Western, Cell Line, Epithelial Cells, Fusobacterium/classification/*physiology, Fusobacterium necrophorum/physiology, Fusobacterium nucleatum/physiology, Humans, Interleukin-8/analysis/*metabolism, Keratinocytes/*enzymology/microbiology, Matrix Metalloproteinase 1/analysis/metabolism, Matrix Metalloproteinase 13/analysis/metabolism, Matrix Metalloproteinase 9/analysis/metabolism, Matrix Metalloproteinases/analysis/*metabolism, Mouth/microbiology, Time FactorsPathogenicity

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114217Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID45308.1