Strain identifier
BacDive ID: 164786
Type strain:
Species: Fusobacterium varium
Strain history: T. Shinjo Fn 521 (Biovar C) <-- H. Beerens 118.
NCBI tax ID(s): 856 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164786
keywords: 16S sequence, Bacteria, mesophilic
description: Fusobacterium varium JCM 3722 is a mesophilic bacterium that was isolated from Ovine pulmonary abscess.
NCBI tax id
- NCBI tax id: 856
- Matching level: species
strain history
- @ref: 67770
- history: T. Shinjo Fn 521 (Biovar C) <-- H. Beerens 118.
doi: 10.13145/bacdive164786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Fusobacteriaceae
- genus: Fusobacterium
- species: Fusobacterium varium
- full scientific name: Fusobacterium varium (Eggerth and Gagnon 1933) Moore and Holdeman 1969 (Approved Lists 1980)
synonyms
@ref synonym 20215 Fusobacterium pseudonecrophorum 20215 Bacteroides varius
@ref: 67770
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Fusobacteriaceae
genus: Fusobacterium
species: Fusobacterium varium
full scientific name: Fusobacterium varium (Eggerth and Gagnon 1933) Moore and Holdeman 1969
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Ovine pulmonary abscess
taxonmaps
- @ref: 69479
- File name: preview.99_1233.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_717;97_839;98_975;99_1233&stattab=map
- Last taxonomy: Fusobacterium
- 16S sequence: AB595132
- Sequence Identity:
- Total samples: 54826
- soil counts: 1169
- aquatic counts: 2796
- animal counts: 50429
- plant counts: 432
Sequence information
16S sequences
- @ref: 67770
- description: Fusobacterium varium gene for 16S ribosomal RNA, partial sequence, strain: JCM 3722
- accession: AB595132
- length: 1457
- database: ena
- NCBI tax ID: 856
External links
@ref: 67770
culture collection no.: JCM 3722, ATCC 51644, KCTC 15083
straininfo link
- @ref: 114217
- straininfo: 45308
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 2223600 | Recognition of biovar C of Fusobacterium necrophorum (Flugge) Moore and Holdeman as Fusobacterium pseudonecrophorum sp. nov., nom. rev. (ex Prevot 1940). | Shinjo T, Hiraiwa K, Miyazato S | Int J Syst Bacteriol | 10.1099/00207713-40-1-71 | 1990 | Animals, DNA, Bacterial/genetics, Fusobacterium Infections/microbiology, Fusobacterium necrophorum/*classification/genetics/metabolism/pathogenicity, Hemagglutination Tests, Liver Abscess/microbiology, Mice, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid, Species Specificity | Metabolism |
Metabolism | 18793368 | Stimulation of epithelial cell matrix metalloproteinase (MMP-2, -9, -13) and interleukin-8 secretion by fusobacteria. | Gursoy UK, Kononen E, Uitto VJ | Oral Microbiol Immunol | 10.1111/j.1399-302X.2008.00453.x | 2008 | Blotting, Western, Cell Line, Epithelial Cells, Fusobacterium/classification/*physiology, Fusobacterium necrophorum/physiology, Fusobacterium nucleatum/physiology, Humans, Interleukin-8/analysis/*metabolism, Keratinocytes/*enzymology/microbiology, Matrix Metalloproteinase 1/analysis/metabolism, Matrix Metalloproteinase 13/analysis/metabolism, Matrix Metalloproteinase 9/analysis/metabolism, Matrix Metalloproteinases/analysis/*metabolism, Mouth/microbiology, Time Factors | Pathogenicity |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
114217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID45308.1 |