Strain identifier

BacDive ID: 16475

Type strain: Yes

Species: Streptomyces lacticiproducens

Strain Designation: GIMN4.001

Culture col. no.: DSM 42050, CCTCC M208214, NRRL B-24800

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18012

BacDive-ID: 16475

DSM-Number: 42050

keywords: gram-positive, mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, coccus-shaped

description: Streptomyces lacticiproducens GIMN4.001 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, rhizosphere of tomato plant.

strain history: <- NRRL; NRRL B-24800 <- X. Xue, CCTCC

doi: 10.13145/bacdive16475.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lacticiproducens
  • full scientific name: Streptomyces lacticiproducens Zhu et al. 2011

@ref: 18012

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lacticiproducens

full scientific name: Streptomyces lacticiproducens Zhu et al. 2011

strain designation: GIMN4.001

type strain: yes

Morphology

cell morphology

  • @ref: 29706
  • gram stain: positive
  • cell shape: coccus-shaped

pigmentation

  • @ref: 29706
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18012
  • name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

  • @ref: 18012
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29706
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29706
  • spore formation: yes

observation

  • @ref: 29706
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2970622599arabinose+carbon source
2970628757fructose+carbon source
2970617234glucose+carbon source
2970628053melibiose+carbon source
2970618222xylose+carbon source
2970617632nitrate+reduction

enzymes

  • @ref: 29706
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 18012
  • sample type: soil, rhizosphere of tomato plant
  • geographic location: Guangzhou
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 18012
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18012
  • description: Streptomyces lacticiproducens 16S ribosomal RNA gene, partial sequence
  • accession: GQ184344
  • length: 1425
  • database: ena
  • NCBI tax ID: 652943

GC content

  • @ref: 18012
  • GC-content: 70.91

External links

@ref: 18012

culture collection no.: DSM 42050, CCTCC M208214, NRRL B-24800

straininfo link

@refpassport
20218http://www.straininfo.net/strains/864014
20218http://www.straininfo.net/strains/864015

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18012Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42050)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42050
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2608910.1099/ijs.0.019125-0
29706Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26089