Strain identifier
BacDive ID: 16475
Type strain:
Species: Streptomyces lacticiproducens
Strain Designation: GIMN4.001
Strain history: <- NRRL; NRRL B-24800 <- X. Xue, CCTCC
NCBI tax ID(s): 652943 (species)
General
@ref: 18012
BacDive-ID: 16475
DSM-Number: 42050
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, coccus-shaped
description: Streptomyces lacticiproducens GIMN4.001 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, rhizosphere of tomato plant.
NCBI tax id
- NCBI tax id: 652943
- Matching level: species
strain history
- @ref: 18012
- history: <- NRRL; NRRL B-24800 <- X. Xue, CCTCC
doi: 10.13145/bacdive16475.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces lacticiproducens
- full scientific name: Streptomyces lacticiproducens Zhu et al. 2011
@ref: 18012
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces lacticiproducens
full scientific name: Streptomyces lacticiproducens Zhu et al. 2011
strain designation: GIMN4.001
type strain: yes
Morphology
cell morphology
- @ref: 29706
- gram stain: positive
- cell shape: coccus-shaped
pigmentation
- @ref: 29706
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18012 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
18012 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
culture temp
- @ref: 18012
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 29706
- oxygen tolerance: aerobe
spore formation
- @ref: 29706
- spore formation: yes
observation
- @ref: 29706
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29706 | 22599 | arabinose | + | carbon source |
29706 | 28757 | fructose | + | carbon source |
29706 | 17234 | glucose | + | carbon source |
29706 | 28053 | melibiose | + | carbon source |
29706 | 18222 | xylose | + | carbon source |
29706 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 29706
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 18012
- sample type: soil, rhizosphere of tomato plant
- geographic location: Guangzhou
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 18012
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18012
- description: Streptomyces lacticiproducens 16S ribosomal RNA gene, partial sequence
- accession: GQ184344
- length: 1425
- database: ena
- NCBI tax ID: 652943
GC content
- @ref: 18012
- GC-content: 70.91
External links
@ref: 18012
culture collection no.: DSM 42050, CCTCC M208214, NRRL B-24800
straininfo link
- @ref: 85511
- straininfo: 403903
literature
- topic: Phylogeny
- Pubmed-ID: 20173013
- title: Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants.
- authors: Zhu HH, Yao Q, Yang SZ, Li ZK, Guo J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.019125-0
- year: 2010
- mesh: Anti-Infective Agents/metabolism, China, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lycopersicon esculentum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
18012 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42050) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42050 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29706 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26089 | 28776041 | |
85511 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403903.1 | StrainInfo: A central database for resolving microbial strain identifiers |