Strain identifier

BacDive ID: 16475

Type strain: Yes

Species: Streptomyces lacticiproducens

Strain Designation: GIMN4.001

Strain history: <- NRRL; NRRL B-24800 <- X. Xue, CCTCC

NCBI tax ID(s): 652943 (species)

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General

@ref: 18012

BacDive-ID: 16475

DSM-Number: 42050

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, coccus-shaped

description: Streptomyces lacticiproducens GIMN4.001 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, rhizosphere of tomato plant.

NCBI tax id

  • NCBI tax id: 652943
  • Matching level: species

strain history

  • @ref: 18012
  • history: <- NRRL; NRRL B-24800 <- X. Xue, CCTCC

doi: 10.13145/bacdive16475.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lacticiproducens
  • full scientific name: Streptomyces lacticiproducens Zhu et al. 2011

@ref: 18012

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lacticiproducens

full scientific name: Streptomyces lacticiproducens Zhu et al. 2011

strain designation: GIMN4.001

type strain: yes

Morphology

cell morphology

  • @ref: 29706
  • gram stain: positive
  • cell shape: coccus-shaped

pigmentation

  • @ref: 29706
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18012STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
18012GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

  • @ref: 18012
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29706
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29706
  • spore formation: yes

observation

  • @ref: 29706
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2970622599arabinose+carbon source
2970628757fructose+carbon source
2970617234glucose+carbon source
2970628053melibiose+carbon source
2970618222xylose+carbon source
2970617632nitrate+reduction

enzymes

  • @ref: 29706
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 18012
  • sample type: soil, rhizosphere of tomato plant
  • geographic location: Guangzhou
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 18012
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18012
  • description: Streptomyces lacticiproducens 16S ribosomal RNA gene, partial sequence
  • accession: GQ184344
  • length: 1425
  • database: ena
  • NCBI tax ID: 652943

GC content

  • @ref: 18012
  • GC-content: 70.91

External links

@ref: 18012

culture collection no.: DSM 42050, CCTCC M208214, NRRL B-24800

straininfo link

  • @ref: 85511
  • straininfo: 403903

literature

  • topic: Phylogeny
  • Pubmed-ID: 20173013
  • title: Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants.
  • authors: Zhu HH, Yao Q, Yang SZ, Li ZK, Guo J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.019125-0
  • year: 2010
  • mesh: Anti-Infective Agents/metabolism, China, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lycopersicon esculentum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18012Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42050)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42050
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29706Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2608928776041
85511Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403903.1StrainInfo: A central database for resolving microbial strain identifiers