Strain identifier

BacDive ID: 164685

Type strain: Yes

Species: Nonomuraea terrae

Strain Designation: CH32

Strain history: H. Ay; Ondokuz Mayis Univ., Turkey; CH32.

NCBI tax ID(s): 2530383 (species)

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General

@ref: 67770

BacDive-ID: 164685

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Nonomuraea terrae CH32 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Soil in Malatya.

NCBI tax id

  • NCBI tax id: 2530383
  • Matching level: species

strain history

  • @ref: 67770
  • history: H. Ay; Ondokuz Mayis Univ., Turkey; CH32.

doi: 10.13145/bacdive164685.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea terrae
  • full scientific name: Nonomuraea terrae Ay 2021

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea terrae

full scientific name: Nonomuraea terrae Ay 2021

strain designation: CH32

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
68048positive
125439positive99.5

colony morphology

  • @ref: 68048
  • colony color: cream

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67770positivegrowth30
68048positivegrowth28-37
68048positiveoptimum30

culture pH

@refabilitytypepHPH range
68048positivegrowth7.0-10.0alkaliphile
68048positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
68048aerobe
125439obligate aerobe99.5

halophily

  • @ref: 68048
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.0-3.0 %

observation

@refobservation
67770quinones: MK-9(H4), MK-9(H6), MK-9(H2)
68048aerial hyphae
68048The cell wall contains meso-diaminopimelic acid and the whole-cell sugars are glucose, ribose, galactose, mannose and madurose.
68048The predominant menaquinones are MK-9(H4), MK-9(H6) and MK-9(H2) while MK-9 exists as minor component.
68048The polar lipid profile is consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, glycolipid, glycophospholipids, phospholipids and unidentified lipids

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6804818305arbutin+hydrolysis
680484853esculin+hydrolysis
6804817632nitrate+reduction
680485291gelatin+reduction
6804816235guanine+degradation
6804837166xylan+degradation
6804815676allantoin-hydrolysis
68048casein-degradation
6804817368hypoxanthine-degradation
6804828017starch-degradation
6804815318xanthine-degradation
6804822599arabinose+carbon source
6804830849L-arabinose+carbon source
6804817057cellobiose+carbon source
6804823652dextrin+carbon source
6804828757fructose+carbon source
68048(+)-D-galactose+carbon source
6804817634D-glucose+carbon source
6804817716lactose+carbon source
6804815443inulin+carbon source
6804816024D-mannose+carbon source
680486731melezitose+carbon source
6804816634raffinose+carbon source
6804826546rhamnose+carbon source
6804817992sucrose+carbon source
6804818222xylose+carbon source
6804817268myo-inositol-carbon source
6804830911sorbitol-carbon source
6804830031succinate-carbon source
6804817151xylitol-carbon source
6804817191L-isoleucine+nitrogen source
6804817196L-asparagine+nitrogen source
6804815428glycine+nitrogen source
6804824741hydroxyproline+nitrogen source
6804816643L-methionine+nitrogen source
6804817203L-proline+nitrogen source
6804817561L-cysteine-nitrogen source
6804818050L-glutamine-nitrogen source
6804815971L-histidine-nitrogen source
6804817295L-phenylalanine-nitrogen source
6804817115L-serine-nitrogen source
6804817895L-tyrosine-nitrogen source
6804816414L-valine-nitrogen source

metabolite production

  • @ref: 68048
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68048C15:01.8
    68048C16:03.4
    68048C17:02
    68048C15:0 3OH1.1
    68048C16:1 w9c2
    68048C17:1 w9c8.7
    68048C18:1 w9c1
    68048C15:0 iso3.7
    68048C16:0 iso26.2
    68048C17:0 iso1.7
    68048C16:1 iso G8.1
    68048C16:0 2OH8.6
    68048C18:0 iso 10-ME1.9
    68048C16:0 10-ME3.4
    68048C17:0 10-methyl19.2
    68048C18:0 10-methly1.5
  • type of FA analysis: whole cell analysis
  • incubation medium: glucose-yeast extract-malt extract
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 14
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA 5.0
  • system: MIS MIDI
  • method/protocol: Sasser, 1990

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationlatitudelongitude
67770Soil in MalatyaTurkeyTURAsia
68048soil, altitude 1150 mTurkeyTURAsiaMalatya38.882237.8933

Sequence information

16S sequences

  • @ref: 68048
  • description: Nonomuraea terrae strain CH32 16S ribosomal RNA gene, partial sequence
  • accession: MG211700
  • length: 1471
  • database: nuccore
  • NCBI tax ID: 2530383

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea terrae CH322866783905draftimg2530383
68048Nonomuraea terrae CH32GCA_004348995contigncbi2530383

GC content

  • @ref: 68048
  • GC-content: 71
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidence
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes63.9
125439BacteriaNetmotilityAbility to perform movementno83.2
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.5
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.5

External links

@ref: 67770

culture collection no.: JCM 33876, KCTC 49368

literature

  • topic: Phylogeny
  • Pubmed-ID: 32519020
  • title: Nonomuraea terrae sp. nov., isolated from arid soil.
  • authors: Ay H
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-020-01941-9
  • year: 2020
  • mesh: Actinobacteria/classification/genetics, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Base Composition, Fatty Acids/analysis, Genome, Bacterial/genetics, Phospholipids/analysis, Phylogeny, Soil/chemistry, *Soil Microbiology, Turkey
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68048Hilal AyNonomuraea terrae sp. nov., isolated from arid soil10.1007/s00203-020-01941-9Arch Microbiol 202: 2197-2205 2020
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG