Strain identifier
BacDive ID: 164629
Type strain: 
Species: Tessaracoccus coleopterorum
Strain history: D.-W. Hyun; Kyung Hee Univ., South Korea; HDW20.
NCBI tax ID(s): 2714950 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164629
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Tessaracoccus coleopterorum JCM 33674 is a mesophilic bacterium that was isolated from Intestine of the dark diving beetle Hydrophilus acuminatus from the Geumgang river in South Korea.
NCBI tax id
- NCBI tax id: 2714950
- Matching level: species
strain history
- @ref: 67770
- history: D.-W. Hyun; Kyung Hee Univ., South Korea; HDW20.
doi: 10.13145/bacdive164629.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Tessaracoccus
- species: Tessaracoccus coleopterorum
- full scientific name: Tessaracoccus coleopterorum Hyun et al. 2021
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Tessaracoccus
species: Tessaracoccus coleopterorum
full scientific name: Tessaracoccus coleopterorum Hyun et al. 2021
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 95 | |
| 125439 | 99.7 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 95.6
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Intestine of the dark diving beetle Hydrophilus acuminatus from the Geumgang river in South Korea
- host species: Hydrophilus acuminatus
Sequence information
16S sequences
- @ref: 67770
- description: Tessaracoccus coleopterorum strain HDW20 16S ribosomal RNA gene, partial sequence
- accession: MN099423
- length: 1442
- database: nuccore
- NCBI tax ID: 2714950
Genome sequences
- @ref: 67770
- description: Tessaracoccus coleopterorum HDW20
- accession: GCA_011174705
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2714950
GC content
- @ref: 67770
- GC-content: 69
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 85.891 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 75.51 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 54.189 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 75.825 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.414 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 95 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 66.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 85.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 95.6 |
External links
@ref: 67770
culture collection no.: JCM 33674, KACC 21348, KCTC 49324
literature
- topic: Phylogeny
- Pubmed-ID: 33289624
- title: Tessaracoccus coleopterorum sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus.
- authors: Hyun DW, Sung H, Kim PS, Lee JY, Jeong YS, Yun JH, Choi JW, Han JE, Lee SY, Tak EJ, Lee JY, Kim HS, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004588
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Intestines/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Propionibacteriaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |