Strain identifier
BacDive ID: 164617
Type strain: 
Species: Paraburkholderia flava
Strain history: J. Kim; Kyonggi Univ., South Korea; LD6.
NCBI tax ID(s): 2547393 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164617
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paraburkholderia flava JCM 33640 is a mesophilic bacterium that was isolated from Forest soil in Suwon.
NCBI tax id
- NCBI tax id: 2547393
- Matching level: species
strain history
- @ref: 67770
- history: J. Kim; Kyonggi Univ., South Korea; LD6.
doi: 10.13145/bacdive164617.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia flava
- full scientific name: Paraburkholderia flava Trinh and Kim 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia flava
full scientific name: Paraburkholderia flava Trinh and Kim 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Forest soil in Suwon
- geographic location: Gyeonggi-do
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Paraburkholderia sp. strain LD6 16S ribosomal RNA gene, partial sequence
- accession: MH379802
- length: 1477
- database: ena
- NCBI tax ID: 1926495
Genome sequences
- @ref: 67770
- description: Paraburkholderia flava LD6
- accession: GCA_004359985
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2547393
GC content
- @ref: 67770
- GC-content: 63.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.744 | no |
| flagellated | no | 81.264 | no |
| gram-positive | no | 97.238 | no |
| anaerobic | no | 98.848 | no |
| aerobic | yes | 90.545 | no |
| halophile | no | 92.263 | no |
| spore-forming | no | 92.077 | no |
| glucose-util | yes | 90.976 | no |
| thermophile | no | 99.589 | yes |
| glucose-ferment | no | 88.278 | no |
External links
@ref: 67770
culture collection no.: JCM 33640, KACC 21387
literature
- topic: Phylogeny
- Pubmed-ID: 32101513
- title: Paraburkholderia flava sp. nov., isolated from cool temperate forest soil.
- authors: Trinh NH, Kim J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004063
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |