Strain identifier

BacDive ID: 164595

Type strain: Yes

Species: Jiangella aurantiaca

Strain history: N. Sahin; Ondokuz Mayis Univ., Turkey; 8K307.

NCBI tax ID(s): 2530373 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164595

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Jiangella aurantiaca JCM 33519 is a Gram-positive bacterium that was isolated from Soil from the Karakum Desert.

NCBI tax id

  • NCBI tax id: 2530373
  • Matching level: species

strain history

  • @ref: 67770
  • history: N. Sahin; Ondokuz Mayis Univ., Turkey; 8K307.

doi: 10.13145/bacdive164595.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Jiangella
  • species: Jiangella aurantiaca
  • full scientific name: Jiangella aurantiaca Saygin et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Jiangellales

family: Jiangellaceae

genus: Jiangella

species: Jiangella aurantiaca

full scientific name: Jiangella aurantiaca Saygin et al. 2020

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 93.336

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil from the Karakum Desert
  • country: Turkmenistan
  • origin.country: TKM
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Jiangella aurantiaca strain 8K307 16S ribosomal RNA gene, partial sequence
  • accession: MG770802
  • length: 1473
  • database: nuccore
  • NCBI tax ID: 2530373

Genome sequences

  • @ref: 67770
  • description: Jiangella aurantiaca 8K307
  • accession: GCA_004349105
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2530373

GC content

  • @ref: 67770
  • GC-content: 71.8
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.155no
gram-positiveyes93.336no
anaerobicno99.278no
aerobicyes93.185no
halophileno89.83no
spore-formingyes54.538no
glucose-utilyes86.303no
thermophileno96.105no
motileno84.198no
glucose-fermentno87.684no

External links

@ref: 67770

culture collection no.: JCM 33519, CGMCC 4.7621

literature

  • topic: Phylogeny
  • Pubmed-ID: 32228773
  • title: Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov.
  • authors: Saygin H, Ay H, Guven K, Sahin N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004011
  • year: 2020
  • mesh: Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes