Strain identifier
BacDive ID: 16456
Type strain:
Species: Streptomyces plumbiresistens
Strain Designation: 13-160
Strain history: Y. B. Lin CCNWHX 13-160.
NCBI tax ID(s): 511811 (species)
General
@ref: 17972
BacDive-ID: 16456
DSM-Number: 42046
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces plumbiresistens 13-160 is an aerobe, spore-forming, mesophilic bacterium that was isolated from lead-contaminated soil.
NCBI tax id
- NCBI tax id: 511811
- Matching level: species
strain history
@ref | history |
---|---|
17972 | <- JCM; JCM 16924 <- Y. B. Lin; CCNWHX 13-160 |
67770 | Y. B. Lin CCNWHX 13-160. |
doi: 10.13145/bacdive16456.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces plumbiresistens
- full scientific name: Streptomyces plumbiresistens Guo et al. 2009
@ref: 17972
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces plumbiresistens
full scientific name: Streptomyces plumbiresistens Guo et al. 2009
strain designation: 13-160
type strain: yes
Morphology
cell morphology
- @ref: 29042
- gram stain: positive
pigmentation
- @ref: 29042
- production: yes
multimedia
- @ref: 17972
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42046.jpg
- caption: Medium 987 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17972
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17972 | positive | growth | 28 | mesophilic |
29042 | positive | growth | 10-45 | |
29042 | positive | optimum | 27.5 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29042 | positive | growth | 5.0-12.0 | alkaliphile |
29042 | positive | optimum | 8.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29042
- oxygen tolerance: aerobe
spore formation
- @ref: 29042
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29042 | NaCl | positive | growth | 05-07 % |
29042 | NaCl | positive | optimum | 6 % |
observation
@ref | observation |
---|---|
29042 | aggregates in chains |
67770 | quinones: MK-9(H6), MK-9(H8), MK-9(H4) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29042 | 22599 | arabinose | + | carbon source |
29042 | 28757 | fructose | + | carbon source |
29042 | 28260 | galactose | + | carbon source |
29042 | 17234 | glucose | + | carbon source |
29042 | 17716 | lactose | + | carbon source |
29042 | 17306 | maltose | + | carbon source |
29042 | 37684 | mannose | + | carbon source |
29042 | 16634 | raffinose | + | carbon source |
29042 | 26546 | rhamnose | + | carbon source |
29042 | 17992 | sucrose | + | carbon source |
29042 | 18222 | xylose | + | carbon source |
29042 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 29042
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
17972 | lead-contaminated soil | Gansu Province, Huixian | China | CHN | Asia |
67770 | Lead-contaminated soil | Huixian, Gansu Province, north-west China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | #Heavy metal |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 17972
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17972
- description: Streptomyces plumbiresistens strain CCNWHX 13-160 16S ribosomal RNA gene, partial sequence
- accession: EU526954
- length: 1429
- database: ena
- NCBI tax ID: 511811
GC content
@ref | GC-content | method |
---|---|---|
17972 | 70.9 | |
67770 | 70.9 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 17972
culture collection no.: DSM 42046, HAMBI 2991, JCM 16924, ACCC 41207, CCNWHX 13-160
straininfo link
- @ref: 85492
- straininfo: 396604
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19502310 | Streptomyces plumbiresistens sp. nov., a lead-resistant actinomycete isolated from lead-polluted soil in north-west China. | Guo JK, Lin YB, Zhao ML, Sun R, Wang TT, Tang M, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.004713-0 | 2009 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Drug Resistance, Bacterial, Genotype, Lead/*pharmacology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*pharmacology, Streptomyces/*classification/drug effects/genetics/isolation & purification | Genetics |
Phylogeny | 25424909 | Streptomyces seymenliensis sp. nov., isolated from soil. | Tatar D, Sahin N | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0339-5 | 2014 | Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Lakes, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Turkey, Vitamin K 2/analysis | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
17972 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42046) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42046 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29042 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25472 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
85492 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396604.1 | StrainInfo: A central database for resolving microbial strain identifiers |