Strain identifier

BacDive ID: 16456

Type strain: Yes

Species: Streptomyces plumbiresistens

Strain Designation: 13-160

Strain history: Y. B. Lin CCNWHX 13-160.

NCBI tax ID(s): 511811 (species)

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General

@ref: 17972

BacDive-ID: 16456

DSM-Number: 42046

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces plumbiresistens 13-160 is an aerobe, spore-forming, mesophilic bacterium that was isolated from lead-contaminated soil.

NCBI tax id

  • NCBI tax id: 511811
  • Matching level: species

strain history

@refhistory
17972<- JCM; JCM 16924 <- Y. B. Lin; CCNWHX 13-160
67770Y. B. Lin CCNWHX 13-160.

doi: 10.13145/bacdive16456.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces plumbiresistens
  • full scientific name: Streptomyces plumbiresistens Guo et al. 2009

@ref: 17972

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces plumbiresistens

full scientific name: Streptomyces plumbiresistens Guo et al. 2009

strain designation: 13-160

type strain: yes

Morphology

cell morphology

  • @ref: 29042
  • gram stain: positive

pigmentation

  • @ref: 29042
  • production: yes

multimedia

  • @ref: 17972
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42046.jpg
  • caption: Medium 987 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17972
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17972positivegrowth28mesophilic
29042positivegrowth10-45
29042positiveoptimum27.5mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
29042positivegrowth5.0-12.0alkaliphile
29042positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29042
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29042
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29042NaClpositivegrowth05-07 %
29042NaClpositiveoptimum6 %

observation

@refobservation
29042aggregates in chains
67770quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2904222599arabinose+carbon source
2904228757fructose+carbon source
2904228260galactose+carbon source
2904217234glucose+carbon source
2904217716lactose+carbon source
2904217306maltose+carbon source
2904237684mannose+carbon source
2904216634raffinose+carbon source
2904226546rhamnose+carbon source
2904217992sucrose+carbon source
2904218222xylose+carbon source
2904217632nitrate+reduction

metabolite production

  • @ref: 29042
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17972lead-contaminated soilGansu Province, HuixianChinaCHNAsia
67770Lead-contaminated soilHuixian, Gansu Province, north-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Heavy metal
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 17972
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17972
  • description: Streptomyces plumbiresistens strain CCNWHX 13-160 16S ribosomal RNA gene, partial sequence
  • accession: EU526954
  • length: 1429
  • database: ena
  • NCBI tax ID: 511811

GC content

@refGC-contentmethod
1797270.9
6777070.9thermal denaturation, midpoint method (Tm)

External links

@ref: 17972

culture collection no.: DSM 42046, HAMBI 2991, JCM 16924, ACCC 41207, CCNWHX 13-160

straininfo link

  • @ref: 85492
  • straininfo: 396604

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19502310Streptomyces plumbiresistens sp. nov., a lead-resistant actinomycete isolated from lead-polluted soil in north-west China.Guo JK, Lin YB, Zhao ML, Sun R, Wang TT, Tang M, Wei GHInt J Syst Evol Microbiol10.1099/ijs.0.004713-02009Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Drug Resistance, Bacterial, Genotype, Lead/*pharmacology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*pharmacology, Streptomyces/*classification/drug effects/genetics/isolation & purificationGenetics
Phylogeny25424909Streptomyces seymenliensis sp. nov., isolated from soil.Tatar D, Sahin NAntonie Van Leeuwenhoek10.1007/s10482-014-0339-52014Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Lakes, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Turkey, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17972Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42046)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42046
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29042Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2547228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85492Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396604.1StrainInfo: A central database for resolving microbial strain identifiers