Strain identifier

BacDive ID: 164558

Type strain: Yes

Species: Chryseobacterium mulctrae

Strain Designation: CA10

Strain history: G.-B. Kim; Chung-Ang Univ., South Korea; CA10.

NCBI tax ID(s): 2576777 (species)

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General

@ref: 67770

BacDive-ID: 164558

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, colony-forming

description: Chryseobacterium mulctrae CA10 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Raw cow's milk sampled in Anseong.

NCBI tax id

  • NCBI tax id: 2576777
  • Matching level: species

strain history

  • @ref: 67770
  • history: G.-B. Kim; Chung-Ang Univ., South Korea; CA10.

doi: 10.13145/bacdive164558.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium mulctrae
  • full scientific name: Chryseobacterium mulctrae Yoon et al. 2019

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium mulctrae

full scientific name: Chryseobacterium mulctrae Yoon et al. 2019

strain designation: CA10

type strain: yes

Morphology

cell morphology

  • @ref: 68208
  • gram stain: negative
  • motility: no

colony morphology

  • @ref: 68208
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Trypticase Soy Agar (TSA)

pigmentation

  • @ref: 68208
  • production: yes
  • name: Flexirubin type pigments

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
68208positivegrowth10-37
68208positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
68208positivegrowth5-9alkaliphile
68208positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 68208
  • oxygen tolerance: aerobe

spore formation

  • @ref: 68208
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
68208NaClpositivegrowth4 %(w/v)
68208NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68208casein+hydrolysis
68208tween 80+hydrolysis53426
68208tween 20-hydrolysis53424
68208starch-hydrolysis28017
68208cellulose-hydrolysis62968
68208dna-hydrolysis16991
68208nitrate-reduction17632
68208glucose-fermentation17234
68208L-arginine-assimilation16467
68208urea-assimilation16199
682084-nitrophenyl beta-D-galactopyranoside hydrolysate-assimilation
68208gelatin+hydrolysis5291
68208D-mannose+assimilation16024
68208L-arabinose-assimilation30849
68208N-acetyl-D-glucosamine-assimilation506227
68208maltose-assimilation17306
68208potassium gluconate-assimilation32032
68208hexanoate-assimilation17120
68208adipate-assimilation17128
68208malate-assimilation25115
68208sodium citrate-assimilation53258
68208phenylacetate-assimilation18401
68208L-rhamnose+assimilation62345
68208N-acetylglucosamine+assimilation59640
68208sucrose+assimilation17992
68208lactate+assimilation24996
68208L-alanine+assimilation16977
68208D-glucose+assimilation17634
68208salicin+assimilation17814
68208melibiose+assimilation28053
68208L-fucose+assimilation18287
68208L-arabinose+assimilation30849
68208sodium citrate+assimilation53258
68208L-histidine+assimilation15971
682084-hydroxybenzoate-assimilation17879
68208L-proline+assimilation17203
68208D-ribose+assimilation16988
68208myo-inositol+assimilation17268
68208itaconate+assimilation17240
68208suberate+assimilation76282
68208sodium malonate+assimilation62983
68208sodium acetate+assimilation32954
68208potassium 5-dehydro-D-gluconate+assimilation
68208glycogen+assimilation28087
682083-hydroxybenzoate-assimilation16193
68208L-serine-assimilation17115
68208D-mannitol-assimilation16899
68208D-sorbitol+assimilation17924
68208propionate+assimilation17272
68208decanoate+assimilation27689
68208valerate+assimilation31011
68208potassium 2-dehydro-D-gluconate+assimilation
682083-hydroxybutyrate+assimilation37054

metabolite production

  • @ref: 68208
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
68208catalase+1.11.1.6
68208cytochrome oxidase+1.9.3.1
68208beta-glucosidase+3.2.1.21

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68208C13:0 iso1.1
    68208C14:0 iso1.4
    68208C15:0 iso37.7
    68208C15:0 iso 3OH3.5
    68208C15:0 anteiso6
    68208C16:01.6
    68208C16:0 iso1.9
    68208C16:0 iso 3OH3.7
    68208C17:0 iso 3OH10.9
    68208C15:0 iso 2OH / C16:1 w7c11.1
    68208C17:1 iso w9c / C16:0 10-methyl15
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A agar
  • incubation temperature: 30
  • incubation time: 2
  • software version: Sherlock 6.3
  • library/peak naming table: TSBA 6.21
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationenrichment cultureenrichment culture durationenrichment culture temperature
67770Raw cow's milk sampled in AnseongRepublic of KoreaKORAsia
68208bovine raw milkRepublic of KoreaKORAsiaAnseongskim milk agar10 days10

taxonmaps

  • @ref: 69479
  • File name: preview.99_11808.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_225;98_254;99_11808&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: MK896290
  • Sequence Identity:
  • Total samples: 4016
  • soil counts: 466
  • aquatic counts: 815
  • animal counts: 1719
  • plant counts: 1016

Sequence information

16S sequences

  • @ref: 67770
  • description: Chryseobacterium sp. CA10 16S ribosomal RNA gene, partial sequence
  • accession: MK896290
  • length: 1439
  • database: ena
  • NCBI tax ID: 2576777

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium mulctrae CA102906003320draftimg2576777
67770Chryseobacterium mulctrae CA10GCA_006175945contigncbi2576777

GC content

  • @ref: 68208
  • GC-content: 33.8
  • method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 33443, KACC 21234

literature

  • topic: Phylogeny
  • Pubmed-ID: 31424383
  • title: Chryseobacterium mulctrae sp. nov., isolated from raw cow's milk.
  • authors: Yoon SH, Lee JE, Han RH, Kwon M, Kim GB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003647
  • year: 2019
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Cattle, Chryseobacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Milk/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68208Sung-Hee Yoon, Ju-Eun Lee, Rae-Hee Han, Mirae Kwon and Geun-Bae KimChryseobacterium mulctrae sp. nov., isolated from raw cow's milk10.1099/ijsem.0.003647IJSEM 69: 3478-3484 2019
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/