Strain identifier
BacDive ID: 164544
Type strain: 
Species: Arthrobacter mobilis
Strain history: C.-H. Sun; Chin. Acad. of Med. Sci., China; E918.
NCBI tax ID(s): 2724944 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164544
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Arthrobacter mobilis JCM 33392 is a mesophilic bacterium that was isolated from Desert soil in Cholistan desert.
NCBI tax id
- NCBI tax id: 2724944
- Matching level: species
strain history
- @ref: 67770
- history: C.-H. Sun; Chin. Acad. of Med. Sci., China; E918.
doi: 10.13145/bacdive164544.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter mobilis
- full scientific name: Arthrobacter mobilis Ye et al. 2020
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter mobilis
full scientific name: Arthrobacter mobilis Ye et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 97.7
spore formation
- @ref: 125439
- spore formation: no
- confidence: 90.3
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Desert soil in Cholistan desert
- country: Pakistan
- origin.country: PAK
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Arthrobacter mobilis 16S ribosomal RNA gene, partial sequence
- accession: MT326212
- length: 1566
- database: nuccore
- NCBI tax ID: 2724944
Genome sequences
- @ref: 67770
- description: Arthrobacter mobilis E918
- accession: GCA_012395835
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2724944
GC content
- @ref: 67770
- GC-content: 68.69
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.421 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.758 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.523 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 64.713 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 73.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 90.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 64.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 89.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.7 |
External links
@ref: 67770
culture collection no.: JCM 33392, CGMCC 1.16978
literature
- topic: Phylogeny
- Pubmed-ID: 32886595
- title: Arthrobacter mobilis sp. nov., a novel actinobacterium isolated from Cholistan desert soil.
- authors: Ye JJ, Liu SW, Lu QP, Cheema MT, Abbas M, Sajid I, Huang DL, Sun CH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004431
- year: 2020
- mesh: Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Pakistan, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |