Strain identifier

BacDive ID: 164539

Type strain: Yes

Species: Tsukamurella sputi

Strain history: J. L. L. Teng; Dept. of Microbiol., Univ. of Hong Kong, China; HKU70.

NCBI tax ID(s): 2591848 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164539

DSM-Number: 109106

keywords: genome sequence, 16S sequence, Bacteria

description: Tsukamurella sputi JCM 33387 is a bacterium that was isolated from Sputum of a patient with respiratory infection in Hong Kong.

NCBI tax id

  • NCBI tax id: 2591848
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. L. L. Teng; Dept. of Microbiol., Univ. of Hong Kong, China; HKU70.

doi: 10.13145/bacdive164539.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Tsukamurellaceae
  • genus: Tsukamurella
  • species: Tsukamurella sputi
  • full scientific name: Tsukamurella sputi Teng et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Tsukamurellaceae

genus: Tsukamurella

species: Tsukamurella sputi

full scientific name: Tsukamurella sputi Teng et al. 2020

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 93.289

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Sputum of a patient with respiratory infection in Hong Kong
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_3845.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1974;97_2373;98_2929;99_3845&stattab=map
  • Last taxonomy: Tsukamurella
  • 16S sequence: MK583682
  • Sequence Identity:
  • Total samples: 12359
  • soil counts: 3431
  • aquatic counts: 2978
  • animal counts: 5160
  • plant counts: 790

Sequence information

16S sequences

  • @ref: 67770
  • description: Tsukamurella sputi 16S ribosomal RNA gene, partial sequence
  • accession: MK583682
  • length: 1407
  • database: nuccore
  • NCBI tax ID: 2591848

Genome sequences

  • @ref: 67770
  • description: Tsukamurella sputi HKU70
  • accession: GCA_007858445
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2591848

GC content

  • @ref: 67770
  • GC-content: 69.9
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.289no
flagellatedno96.746no
gram-positiveyes88.582no
anaerobicno99.637no
aerobicyes92.99no
halophileno94.843no
spore-formingno85.197no
glucose-utilyes93.066no
thermophileno99.215yes
glucose-fermentno89.897no

External links

@ref: 67770

culture collection no.: JCM 33387, DSM 109106

literature

  • topic: Phylogeny
  • Pubmed-ID: 31738158
  • title: Tsukamurella asaccharolytica sp. nov., Tsukamurella conjunctivitidis sp. nov. and Tsukamurella sputi sp. nov., isolated from patients with bacteraemia, conjunctivitis and respiratory infection in Hong Kong.
  • authors: Teng JLL, Fong JYH, Fok KMN, Lee HH, Chiu TH, Tang Y, Ngan AHY, Wong SSY, Que TL, Lau SKP, Woo PCY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003861
  • year: 2020
  • mesh: Actinobacteria/*classification/isolation & purification, Bacteremia/*microbiology, Bacterial Typing Techniques, Base Composition, Base Sequence, Conjunctivitis/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Hong Kong, Humans, Mycolic Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Respiratory Tract Infections/*microbiology, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes