Strain identifier

BacDive ID: 164512

Type strain: Yes

Species: Streptococcus periodonticum

Strain history: J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC F135.

NCBI tax ID(s): 2490633 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164512

keywords: genome sequence, 16S sequence, Bacteria

description: Streptococcus periodonticum JCM 33300 is a bacterium that was isolated from Human subgingival dental plaque of periodontitis lesion in the Republic of Korea.

NCBI tax id

  • NCBI tax id: 2490633
  • Matching level: species

strain history

  • @ref: 67770
  • history: J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC F135.

doi: 10.13145/bacdive164512.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus periodonticum
  • full scientific name: Streptococcus periodonticum Lim et al. 2019

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus periodonticum

full scientific name: Streptococcus periodonticum Lim et al.

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human subgingival dental plaque of periodontitis lesion in the Republic of Korea

Sequence information

16S sequences

  • @ref: 67770
  • description: Streptococcus periodonticum 16S ribosomal RNA gene, partial sequence
  • accession: MK452275
  • length: 1422
  • database: nuccore
  • NCBI tax ID: 2490633

Genome sequences

  • @ref: 67770
  • description: Streptococcus periodonticum KCOM 2412
  • accession: GCA_003963555
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 2490633

GC content

  • @ref: 67770
  • GC-content: 38.9
  • method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 33300, KCOM 2412

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31053905Streptococcus periodonticum sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion.Lim YK, Park SN, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JKCurr Microbiol10.1007/s00284-019-01695-82019Bacteria, Anaerobic, Bacterial Proteins/genetics, Base Composition, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Dental Plaque/*microbiology, Fatty Acids/analysis, Genome, Bacterial/genetics, Humans, Periodontitis/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Streptococcus/*classification/genetics/*physiology, Superoxide Dismutase/geneticsGenetics
Phylogeny34417650Streptococcus vaginalis sp. nov., a novel bacterial species isolated from vaginal swabs of a pregnant woman with diabetes.Chao AS, Lin CY, Chao A, Lee YS, Chang YC, Wu HC, Dai YJ, Liao WQ, Kao FC, Chen YSArch Microbiol10.1007/s00203-021-02532-y2021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Diabetes Mellitus, Fatty Acids, Female, Humans, Nucleic Acid Hybridization, Phylogeny, Pregnancy, *Pregnant Women, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/geneticsPathogenicity

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/