Strain identifier
BacDive ID: 164507
Type strain: 
Species: Shewanella vesiculosa
Strain history: T. Kurihara; Kyoto Univ., Japan; HM13.
NCBI tax ID(s): 518738 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 164507
keywords: 16S sequence, Bacteria, psychrophilic
description: Shewanella vesiculosa JCM 33296 is a psychrophilic bacterium that was isolated from Intestine of a horse mackerel .
NCBI tax id
- NCBI tax id: 518738
- Matching level: species
strain history
- @ref: 67770
- history: T. Kurihara; Kyoto Univ., Japan; HM13.
doi: 10.13145/bacdive164507.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella vesiculosa
- full scientific name: Shewanella vesiculosa Bozal et al. 2009
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella vesiculosa
full scientific name: Shewanella vesiculosa Bozal et al. 2009
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 18
Physiology and metabolism
observation
- @ref: 67770
- observation: Production of Extracellular membrane vesicles
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Intestine of a horse mackerel (Trachurus japonicus)
- host species: Trachurus japonicus
taxonmaps
- @ref: 69479
- File name: preview.99_2178.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_1400;98_1701;99_2178&stattab=map
- Last taxonomy: Shewanella
- 16S sequence: LC461000
- Sequence Identity:
- Total samples: 11713
- soil counts: 472
- aquatic counts: 8506
- animal counts: 2645
- plant counts: 90
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Shewanella sp. HM13 gene for 16S ribosomal RNA, partial sequence, clone: A | LC460999 | 1506 | nuccore | 50422 |
| 67770 | Shewanella sp. HM13 gene for 16S ribosomal RNA, partial sequence, clone: B | LC461000 | 1506 | nuccore | 50422 |
External links
@ref: 67770
culture collection no.: JCM 33296
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |