Strain identifier
BacDive ID: 164496
Type strain: 
Species: Lacticaseibacillus suibinensis
Strain history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 247-3.
NCBI tax ID(s): 2486011 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164496
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lacticaseibacillus suibinensis JCM 33275 is a mesophilic bacterium that was isolated from Traditional pickle in Heilongjiang Province.
NCBI tax id
- NCBI tax id: 2486011
- Matching level: species
strain history
- @ref: 67770
- history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 247-3.
doi: 10.13145/bacdive164496.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus suibinensis
- full scientific name: Lacticaseibacillus suibinensis (Long et al. 2020) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus suibinensis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus suibinensis
full scientific name: Lacticaseibacillus suibinensis (Long et al. 2020) Zheng et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 91 | |
| 125438 | 94.905 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Traditional pickle in Heilongjiang Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Lacticaseibacillus suibinensis strain 247-3 16S ribosomal RNA gene, partial sequence
- accession: MK110834
- length: 1441
- database: nuccore
- NCBI tax ID: 2486011
Genome sequences
- @ref: 67770
- description: Lacticaseibacillus suibinensis 247-3
- accession: GCA_003946175
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2486011
GC content
- @ref: 67770
- GC-content: 53
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 94.905 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.452 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.734 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 81.452 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 65.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 69 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 85.7 |
External links
@ref: 67770
culture collection no.: JCM 33275, NCIMB 15176
literature
- topic: Phylogeny
- Pubmed-ID: 32101512
- title: Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt.
- authors: Long GY, Wei YX, Tu W, Gu CT
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004060
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Food, Preserved/*microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Yogurt/*microbiology
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |