Strain identifier
BacDive ID: 164494
Type strain:
Species: Lacticaseibacillus daqingensis
Strain history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 143-4(a).
NCBI tax ID(s): 2486014 (species)
General
@ref: 67770
BacDive-ID: 164494
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lacticaseibacillus daqingensis JCM 33273 is a mesophilic bacterium that was isolated from Traditional pickle in Heilongjiang Province.
NCBI tax id
- NCBI tax id: 2486014
- Matching level: species
strain history
- @ref: 67770
- history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 143-4(a).
doi: 10.13145/bacdive164494.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus daqingensis
- full scientific name: Lacticaseibacillus daqingensis (Long et al. 2020) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus daqingensis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus daqingensis
full scientific name: Lacticaseibacillus daqingensis (Long et al. 2020) Zheng et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Traditional pickle in Heilongjiang Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus sp. strain 143-4(a) 16S ribosomal RNA gene, partial sequence
- accession: MK110842
- length: 1429
- database: ena
- NCBI tax ID: 2486014
Genome sequences
- @ref: 67770
- description: Lacticaseibacillus daqingensis 143-4(a)
- accession: GCA_003946115
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2486014
GC content
- @ref: 67770
- GC-content: 58
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.429 | no |
flagellated | no | 97.909 | no |
gram-positive | yes | 94.508 | no |
anaerobic | no | 91.003 | no |
aerobic | no | 98.66 | no |
halophile | yes | 80.973 | no |
spore-forming | no | 94.652 | no |
glucose-util | yes | 92.805 | no |
thermophile | no | 98.845 | yes |
glucose-ferment | yes | 88.3 | no |
External links
@ref: 67770
culture collection no.: JCM 33273, CCM 8948, CCTCC 2018390, NCIMB 15173
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 32101512 | Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt. | Long GY, Wei YX, Tu W, Gu CT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004060 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Food, Preserved/*microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Yogurt/*microbiology | Biotechnology |
Phylogeny | 33724174 | Lacticaseibacillus absianus sp. nov., isolated from the cecum of a mini-pig. | Bai L, Paek J, Shin Y, Park HY, Chang YH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004752 | 2021 |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |