Strain identifier

BacDive ID: 164494

Type strain: Yes

Species: Lacticaseibacillus daqingensis

Strain history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 143-4(a).

NCBI tax ID(s): 2486014 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164494

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lacticaseibacillus daqingensis JCM 33273 is a mesophilic bacterium that was isolated from Traditional pickle in Heilongjiang Province.

NCBI tax id

  • NCBI tax id: 2486014
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 143-4(a).

doi: 10.13145/bacdive164494.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus daqingensis
  • full scientific name: Lacticaseibacillus daqingensis (Long et al. 2020) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus daqingensis

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus daqingensis

full scientific name: Lacticaseibacillus daqingensis (Long et al. 2020) Zheng et al. 2020

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Traditional pickle in Heilongjiang Province
  • country: China
  • origin.country: CHN
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus sp. strain 143-4(a) 16S ribosomal RNA gene, partial sequence
  • accession: MK110842
  • length: 1429
  • database: ena
  • NCBI tax ID: 2486014

Genome sequences

  • @ref: 67770
  • description: Lacticaseibacillus daqingensis 143-4(a)
  • accession: GCA_003946115
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2486014

GC content

  • @ref: 67770
  • GC-content: 58
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.429no
flagellatedno97.909no
gram-positiveyes94.508no
anaerobicno91.003no
aerobicno98.66no
halophileyes80.973no
spore-formingno94.652no
glucose-utilyes92.805no
thermophileno98.845yes
glucose-fermentyes88.3no

External links

@ref: 67770

culture collection no.: JCM 33273, CCM 8948, CCTCC 2018390, NCIMB 15173

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny32101512Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt.Long GY, Wei YX, Tu W, Gu CTInt J Syst Evol Microbiol10.1099/ijsem.0.0040602020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Food, Preserved/*microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Yogurt/*microbiologyBiotechnology
Phylogeny33724174Lacticaseibacillus absianus sp. nov., isolated from the cecum of a mini-pig.Bai L, Paek J, Shin Y, Park HY, Chang YHInt J Syst Evol Microbiol10.1099/ijsem.0.0047522021

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/