Strain identifier

BacDive ID: 164466

Type strain: Yes

Species: Bacillus xiapuensis

Strain Designation: FJAT-46582

Strain history: G.-H. Liu; Fujian Acad. of Agric. Sci., China; FJAT-46582.

NCBI tax ID(s): 2014075 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 9.3 (current version)

General

@ref: 67770

BacDive-ID: 164466

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, colony-forming

description: Bacillus xiapuensis FJAT-46582 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from Sediment of the coastal area.

NCBI tax id

  • NCBI tax id: 2014075
  • Matching level: species

strain history

  • @ref: 67770
  • history: G.-H. Liu; Fujian Acad. of Agric. Sci., China; FJAT-46582.

doi: 10.13145/bacdive164466.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus xiapuensis
  • full scientific name: Bacillus xiapuensis Liu et al. 2019

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus xiapuensis

full scientific name: Bacillus xiapuensis Liu et al. 2019

strain designation: FJAT-46582

type strain: yes

Morphology

cell morphology

  • @ref: 67933
  • gram stain: positive
  • cell length: 1.6-2.8 µm
  • cell width: 0.5-0.7 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 67933
  • colony size: 1.35-1.65 mm
  • colony color: cream white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: 2216E

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67770positivegrowth28
67933positivegrowth10-30
67933positiveoptimum25

culture pH

@refabilitytypepHPH range
67933positivegrowth6.0-11.0alkaliphile
67933positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 67933
  • oxygen tolerance: aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
67933terminal, ellipsoidal sporesendosporeyes
125439yes90.8
125438yes91.882

halophily

@refsaltgrowthtested relationconcentration
67933NaClpositivegrowth0.0-7.0 %
67933NaClpositiveoptimum0 %

observation

@refobservation
67770quinones: MK-7
67933The cell-wall peptidoglycan contains meso-diaminopimelic acid
67933the main isoprenoid quinone is MK-7
67933The main polar lipids are diphosphatidylglycerol, phosphatidylglycerol and phosphatidyl ethanolamine

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6793317632nitrate+reduction
6793328017starch-hydrolysis
6793353424tween 20-hydrolysis
6793353423tween 40-hydrolysis
6793353425tween 60-hydrolysis
6793353426tween 80-hydrolysis
679335291gelatin-assimilation
67933O-nitrophenyl-beta-D-galactopyranosid-assimilation
6793316947citrate-assimilation
67933esculin ferric citrate-builds acid from
6793365327D-xylose-builds acid from
6793316988D-ribose-builds acid from
67933potassium 5-dehydro-D-gluconate-builds acid from
6793330849L-arabinose-builds acid from
6793316443D-tagatose-builds acid from
6793317634D-glucose+builds acid from
6793317306maltose+builds acid from
67933potassium 2-dehydro-D-gluconate-builds acid from
6793327082trehalose-builds acid from
6793332528turanose-builds acid from
6793312936D-galactose-builds acid from
6793315824D-fructose-builds acid from
6793317992sucrose-builds acid from
6793317057cellobiose-builds acid from
6793328053melibiose-builds acid from
6793318305arbutin-builds acid from
6793316024D-mannose-builds acid from
6793317814salicin-builds acid from
6793317716lactose-builds acid from
6793316899D-mannitol-builds acid from
6793328087glycogen-builds acid from
6793328017starch-builds acid from
6793317108D-arabinose-builds acid from
679336731melezitose-builds acid from
6793318287L-fucose-builds acid from
6793362345L-rhamnose-builds acid from
6793328066gentiobiose-builds acid from
6793317924D-sorbitol-builds acid from
6793318333D-arabitol-builds acid from
6793362318D-lyxose-builds acid from
6793328847D-fucose-builds acid from
6793317754glycerol+builds acid from
6793359640N-acetylglucosamine-builds acid from
67933320061methyl alpha-D-glucopyranoside-builds acid from
6793317268myo-inositol-builds acid from
6793332032potassium gluconate-builds acid from
6793374863methyl beta-D-xylopyranoside-builds acid from
6793316634raffinose-builds acid from
6793327613amygdalin-builds acid from
6793343943methyl alpha-D-mannoside-builds acid from
6793317113erythritol-builds acid from
6793365328L-xylose-builds acid from
6793315963ribitol-builds acid from
6793317266L-sorbose-builds acid from
6793316813galactitol-builds acid from
6793315443inulin-builds acid from
6793317151xylitol-builds acid from
6793318403L-arabitol-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.group IDis resistantresistance conc.
6793350845doxycyclineyesyes30 µg
6793348923erythromycinyesyes15 µg
6793317833gentamicinyesyes120 µg
6793328077rifampicinyesyes5 µg
6793328001vancomycinyesyes30 µg
6793318208penicillin gyesyes10 µg
67933474053cefazolinyesyes30 µg
6793328971ampicillinyesyes10 µg20
679339321sulbactamyesyes10 µg20
6793317698chloramphenicolyesyes30 µg
6793327902tetracyclineyesyes30 µg
679337809oxacillinyesyes1 µg
679332637amikacinyesyes30 µg
679338309polymyxin byesyes300 µg
6793317833gentamicinyesyes10 µg
679336104kanamycinyesyes30 µg
679337507neomycinyesyes30 µg
679333745clindamycinyesyes2 µg
6793317076streptomycinyesyes300 µg
679332955azithromycinyesyes15 µg

metabolite production

@refChebi-IDmetaboliteproduction
6793316136hydrogen sulfideno
6793335581indoleno

metabolite tests

  • @ref: 67933
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
67933catalase+1.11.1.6
67933cytochrome oxidase-1.9.3.1
67933urease-3.5.1.5
67933arginine dihydrolase-3.5.3.6
67933lysine decarboxylase-4.1.1.18
67933ornithine decarboxylase-4.1.1.17
67933alkaline phosphatase+3.1.3.1
67933esterase (C 4)+
67933esterase Lipase (C 8)+
67933naphthol-AS-BI-phosphohydrolase+
67933alpha-glucosidase+3.2.1.20
67933beta-galactosidase-3.2.1.23
67933beta-glucuronidase-3.2.1.31
67933beta-glucosidase-3.2.1.21
67933lipase (C 14)-
67933leucine arylamidase-3.4.11.1
67933valine arylamidase-
67933cystine arylamidase-3.4.11.3
67933trypsin-3.4.21.4
67933alpha-chymotrypsin-3.4.21.1
67933acid phosphatase-3.1.3.2
67933alpha-galactosidase-3.2.1.22
67933N-acetyl-beta-glucosaminidase-3.2.1.52
67933alpha-mannosidase-3.2.1.24
67933alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling datelatitudelongitude
67770Sediment of the coastal areaXiapu County, Fujian ProvinceChinaCHNAsia
67933sedimentcoastal region in Xiapu County, Fujian ProvinceChinaCHNAsia2016-08-2026.9167120.117

Sequence information

16S sequences

  • @ref: 67770
  • description: Bacillus xiapuensis strain FJAT-46582 16S ribosomal RNA gene, partial sequence
  • accession: KY646144
  • length: 1396
  • database: nuccore
  • NCBI tax ID: 2014075

Genome sequences

  • @ref: 67933
  • description: Bacillus xiapuensis FJAT-46582
  • accession: GCA_002797355
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2014075

GC content

  • @ref: 67933
  • GC-content: 44.2
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes78.347yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no88.624yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes75.457no
125438spore-formingspore-formingAbility to form endo- or exosporesyes91.882no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno84.099yes
125438motile2+flagellatedAbility to perform flagellated movementyes84.795no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes90.8
125439BacteriaNetmotilityAbility to perform movementyes88.7
125439BacteriaNetgram_stainReaction to gram-stainingvariable88.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative anaerobe85.3

External links

@ref: 67770

culture collection no.: JCM 33155, CCTCC AB 2017047

literature

  • topic: Phylogeny
  • Pubmed-ID: 30950781
  • title: Bacillus xiapuensis sp. nov., isolated from marine sediment.
  • authors: Liu GH, Liu B, Liu QY, Wang JP, Che JM, Zhang HF, Lan JL, Sengonca C
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003381
  • year: 2019
  • mesh: Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67933Guo-Hong Liu, Bo Liu, Qin-Ying Liu, Jie-Ping Wang, Jian-Mei Che, Hai-Feng Zhang, Jiang-Lin Lan, Cetin SengoncaBacillus xiapuensis sp. nov., isolated from marine sediment10.1099/ijsem.0.003381IJSEM 69: 1714-1719 2019
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG