Strain identifier
BacDive ID: 16444
Type strain:
Species: Streptomyces mordarskii
Strain Designation: W3591
Strain history: KCC S-0140 <-- M. Mayama <-- IFO 3192 <-- Westerdijk, CBS.
NCBI tax ID(s): 1226758 (species)
General
@ref: 16662
BacDive-ID: 16444
DSM-Number: 42004
keywords: 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces mordarskii W3591 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1226758
- Matching level: species
strain history
@ref | history |
---|---|
16662 | <- M. Goodfellow, Univ. Newcastle; NNRL B-1346 <- R. E. Gordon, IMRU |
67770 | KCC S-0140 <-- M. Mayama <-- IFO 3192 <-- Westerdijk, CBS. |
doi: 10.13145/bacdive16444.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces mordarskii
- full scientific name: Streptomyces mordarskii Kumar and Goodfellow 2008
@ref: 16662
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces mordarskii
full scientific name: Streptomyces mordarskii Kumar and Goodfellow 2008
strain designation: W3591
type strain: yes
Morphology
pigmentation
- @ref: 32383
- production: no
multimedia
- @ref: 16662
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42004.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16662 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
16662 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
16662 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16662 | positive | growth | 28 | mesophilic |
32383 | positive | growth | 10-37 | |
67770 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 32383
- ability: positive
- type: growth
- pH: 06-10
- PH range: alkaliphile
Physiology and metabolism
spore formation
- @ref: 32383
- spore formation: yes
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32383 | 18403 | L-arabitol | + | carbon source |
32383 | 17057 | cellobiose | + | carbon source |
32383 | 28757 | fructose | + | carbon source |
32383 | 28260 | galactose | + | carbon source |
32383 | 17234 | glucose | + | carbon source |
32383 | 28087 | glycogen | + | carbon source |
32383 | 17306 | maltose | + | carbon source |
32383 | 37684 | mannose | + | carbon source |
32383 | 16634 | raffinose | + | carbon source |
32383 | 26546 | rhamnose | + | carbon source |
32383 | 33942 | ribose | + | carbon source |
32383 | 17992 | sucrose | + | carbon source |
32383 | 27082 | trehalose | + | carbon source |
32383 | 18222 | xylose | + | carbon source |
32383 | 4853 | esculin | + | hydrolysis |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
16662 | soil | Japan | JPN | Asia |
67770 | Soil | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 16662
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bifidobacterium longum subsp. longum gene for 16S rRNA, partial sequence, strain: JCM 5052 | AB116315 | 475 | ena | 1679 |
20218 | Streptomyces hygroscopicus subsp. hygroscopicus gene for 16S rRNA, partial sequence, strain: NBRC 3192 | AB184740 | 1470 | ena | 68042 |
32383 | Streptomyces mordarskii strain NRRL B-1346 16S ribosomal RNA gene, partial sequence | EF408735 | 1450 | nuccore | 1226758 |
GC content
- @ref: 32383
- GC-content: 70.4
External links
@ref: 16662
culture collection no.: DSM 42004, ATCC 10976, NRRL B-1346, ETH 13081, DSM 40771, IMET 41368, IMRU 3591, LBG A 3042, RIA 99, IFO 3192, JCM 4140, NBRC 3192, CECT 3137, HUT 6026, ICMP 496, IFM 1100, JCM 5052, KCTC 9029, NBIMCC 875, NCIMB 14451
straininfo link
- @ref: 85481
- straininfo: 92633
literature
- topic: Phylogeny
- Pubmed-ID: 18523180
- title: Five new members of the Streptomyces violaceusniger 16S rRNA gene clade: Streptomyces castelarensis sp. nov., comb. nov., Streptomyces himastatinicus sp. nov., Streptomyces mordarskii sp. nov., Streptomyces rapamycinicus sp. nov. and Streptomyces ruanii sp. nov.
- authors: Kumar Y, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65408-0
- year: 2008
- mesh: Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Species Specificity, Streptomyces/*classification/genetics/physiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
16662 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42004) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42004 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
32383 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28609 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
85481 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92633.1 | StrainInfo: A central database for resolving microbial strain identifiers |