Strain identifier

BacDive ID: 16442

Type strain: Yes

Species: Streptomyces demainii

Strain Designation: RGB A-777

Strain history: <- D. P. Labeda; NRRL B-1478 <- ; RGB A-777

NCBI tax ID(s): 588122 (species)

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General

@ref: 10412

BacDive-ID: 16442

DSM-Number: 41600

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces demainii RGB A-777 is a mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 588122
  • Matching level: species

strain history

  • @ref: 10412
  • history: <- D. P. Labeda; NRRL B-1478 <- ; RGB A-777

doi: 10.13145/bacdive16442.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces demainii
  • full scientific name: Streptomyces demainii Goodfellow et al. 2008

@ref: 10412

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces demainii

full scientific name: Streptomyces demainii Goodfellow et al. 2008

strain designation: RGB A-777

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69292Green brown (8000)ISP 3
69292Green brown (8000)ISP 4
69292Grey brown (8019)ISP 5
69292Olive brown (8008)ISP 7
69292Pale brown (8025)ISP 2
69292Terra brown (8028)suter with tyrosine
69292Terra brown (8028)suter without tyrosine
69292Traffic grey A (7042), traffic grey B (7043)ISP 6

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69292yesAerial myceliumStone grey (7030)ISP 2
69292yesAerial myceliumBeige grey (7006), mouse grey (7005), black brown (8022)ISP 3
69292yesAerial myceliumPure white (9010), signal black (9004)ISP 4
69292yesAerial myceliumDusty grey (7037)ISP 5
69292yesAerial myceliumISP 6
69292yesAerial myceliumStone grey (7030)ISP 7
69292yesAerial myceliumPure white (9010)suter with tyrosine
69292yesAerial myceliumPure white (9010)suter without tyrosine

pigmentation

@refproductionnamecolor
69292noMelanin
69292yessoluble pigmentOlive brown (8008), khaki grey (7008), sand yellow (1002), ochre yellow (1024), clay brown (8003)

multimedia

@refmultimedia contentcaptionintellectual property rights
69292DSM_41600_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69292DSM_41600_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 10412
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 10412
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69292
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6929222599arabinose+growth
6929262968cellulose-growth
6929228757fructose+growth
6929217234glucose+growth
6929217268inositol+/-growth
6929237684mannose+growth
6929216634raffinose+growth
6929226546rhamnose+growth
6929217992sucrose+growth
6929218222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69292---+--+/-+-+/-+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69292+---+++/-+++++/---+/-+++-

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_359.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_303;99_359&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: HQ244446
  • Sequence Identity:
  • Total samples: 834
  • soil counts: 635
  • aquatic counts: 65
  • animal counts: 94
  • plant counts: 40

Safety information

risk assessment

  • @ref: 10412
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces violaceusniger strain CGMCC 4.1423 16S ribosomal RNA gene, partial sequenceHQ2444461374ena68280
20218Streptomyces demainii strain DSM 41600 16S ribosomal RNA gene, partial sequenceFJ4061261398ena588122
20218Streptomyces violaceusniger gene for 16S ribosomal RNA, partial sequence, strain: JCM 4850D44406121ena68280
20218Streptomyces demainii strain NRRL B-1478 16S ribosomal RNA gene, partial sequenceDQ3347821488ena588122

Genome sequences

  • @ref: 66792
  • description: Streptomyces demainii DSM 41600
  • accession: 2923609139
  • assembly level: draft
  • database: img
  • NCBI tax ID: 588122

External links

@ref: 10412

culture collection no.: DSM 41600, NRRL B-1478

literature

Pubmed-IDtitleauthorsjournalDOIyear
25191320An actinomycete isolate from solitary wasp mud nest having strong antibacterial activity and kills the Candida cells due to the shrinkage and the cytosolic loss.Kumar V, Naik B, Gusain O, Bisht GSFront Microbiol10.3389/fmicb.2014.004462014
35208804Taxonomic Positions of a Nyuzenamide-Producer and Its Closely Related Strains.Komaki H, Igarashi Y, Tamura TMicroorganisms10.3390/microorganisms100203492022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10412Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41600)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41600
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69292Wink, J.https://cdn.dsmz.de/wink/DSM%2041600.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta