Strain identifier

BacDive ID: 16441

Type strain: Yes

Species: Streptomyces albiflaviniger

Strain Designation: Nr.1

Strain history: <- D. P. Labeda; NRRL B-1356

NCBI tax ID(s): 114683 (species)

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General

@ref: 10411

BacDive-ID: 16441

DSM-Number: 41598

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces albiflaviniger Nr.1 is a mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 114683
  • Matching level: species

strain history

  • @ref: 10411
  • history: <- D. P. Labeda; NRRL B-1356

doi: 10.13145/bacdive16441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albiflaviniger
  • full scientific name: Streptomyces albiflaviniger Goodfellow et al. 2008

@ref: 10411

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albiflaviniger

full scientific name: Streptomyces albiflaviniger Goodfellow et al. 2008

strain designation: Nr.1

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69289Grey beige (1019)suter with tyrosine
69289ColorlessISP 4
69289Ivory (1014)ISP 2
69289Ivory (1014)ISP 3
69289Ivory (1014)suter without tyrosine
69289Yellow grey (7034)ISP 6

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69289yesAerial myceliumPure white (9010)ISP 2
69289yesAerial myceliumLight ivory (1015)ISP 3
69289yesAerial myceliumTraffic white (9016)ISP 4
69289yesAerial myceliumOyster white (1013)ISP 5
69289noAerial myceliumISP 6
69289yesAerial myceliumLight ivory (1015), ivory (1014)ISP 7
69289yesAerial myceliumPapyrus white (9018)suter with tyrosine
69289yesAerial myceliumOyster white (1013)suter without tyrosine

pigmentation

@refproductionnamecolor
69289yesMelanin
69289yessoluble pigmentGreen beige (1000), beige (1001), light ivory (1015), sand yellow (1002), ochre brown (8001), brown beige (1011), ivory (1014)

multimedia

@refmultimedia contentcaptionintellectual property rights
10411https://www.dsmz.de/microorganisms/photos/DSM_41598.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69289DSM_41598_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69289DSM_41598_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 10411
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 10411
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69289
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6928922599arabinose+growth
6928962968cellulose-growth
6928928757fructose+growth
6928917234glucose+growth
6928917268inositol+growth
6928937684mannose+growth
6928916634raffinose+growth
6928926546rhamnose+growth
6928917992sucrose+growth
6928918222xylose+growth
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)-
68382leucine arylamidase+3.4.11.1
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69289---+---++-+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69289++/--+/-++/-+/-++++/-+/----+/-++-

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_359.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_303;99_359&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AJ391812
  • Sequence Identity:
  • Total samples: 834
  • soil counts: 635
  • aquatic counts: 65
  • animal counts: 94
  • plant counts: 40

Safety information

risk assessment

  • @ref: 10411
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Streptomyces albiflaviniger partial 16S rRNA gene, type strain NRRL B-1356T
  • accession: AJ391812
  • length: 1466
  • database: ena
  • NCBI tax ID: 114683

External links

@ref: 10411

culture collection no.: DSM 41598, NRRL B-1356

straininfo link

  • @ref: 85479
  • straininfo: 88539

literature

  • topic: Phylogeny
  • Pubmed-ID: 33797685
  • title: Genome-based classification of the Streptomyces violaceusniger clade and description of Streptomyces sabulosicollis sp. nov. from an Indonesian sand dune.
  • authors: Kusuma AB, Nouioui I, Goodfellow M
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-021-01564-0
  • year: 2021
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids, Indonesia, Phylogeny, RNA, Ribosomal, 16S, *Sand, Sequence Analysis, DNA, Soil Microbiology, *Streptomyces/genetics
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10411Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41598)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41598
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69289Wink, J.https://cdn.dsmz.de/wink/DSM%2041598.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88539.1StrainInfo: A central database for resolving microbial strain identifiers