Strain identifier
BacDive ID: 16440
Type strain: 
Species: Streptomyces sudanensis
Strain Designation: SD 504
Strain history: <- M. Goodfellow; SD 504
NCBI tax ID(s): 1169864 (strain), 436397 (species)
version 9.3 (current version)
General
@ref: 10661
BacDive-ID: 16440
DSM-Number: 41923
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Streptomyces sudanensis SD 504 is a mesophilic, Gram-positive bacterium that was isolated from from patients with mycetoma infections.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 436397 | species |
| 1169864 | strain |
strain history
- @ref: 10661
- history: <- M. Goodfellow; SD 504
doi: 10.13145/bacdive16440.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces sudanensis
- full scientific name: Streptomyces sudanensis Quintana et al. 2008
@ref: 10661
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces sudanensis
full scientific name: Streptomyces sudanensis Quintana et al. 2008
strain designation: SD 504
type strain: yes
Morphology
cell morphology
- @ref: 125438
- gram stain: positive
- confidence: 91.747
multimedia
- @ref: 10661
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41923.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10661 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10661 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 10661 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 10661
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 10661
- sample type: from patients with mycetoma infections
- country: Sudan
- origin.country: SDN
- continent: Africa
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Infection | #Disease |
| #Infection | #Patient |
Sequence information
16S sequences
- @ref: 10661
- description: Streptomyces sudanensis strain SD504 16S ribosomal RNA gene, partial sequence
- accession: EF515876
- length: 1521
- database: nuccore
- NCBI tax ID: 1169864
Genome sequences
- @ref: 66792
- description: Streptomyces sudanensis SD 504
- accession: GCA_023614315
- assembly level: chromosome
- database: ncbi
- NCBI tax ID: 436397
GC content
- @ref: 10661
- GC-content: 70.1
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.747 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.65 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.797 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 84.543 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.625 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89.5 | no |
External links
@ref: 10661
culture collection no.: DSM 41923, NRRL B-24575
literature
- topic: Phylogeny
- Pubmed-ID: 18157699
- title: Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma.
- authors: Quintana ET, Wierzbicka K, Mackiewicz P, Osman A, Fahal AH, Hamid ME, Zakrzewska-Czerwinska J, Maldonado LA, Goodfellow M
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-007-9205-z
- year: 2007
- mesh: Actinomycetales Infections/*microbiology, DNA, Bacterial/genetics, Humans, Molecular Sequence Data, Phylogeny, Streptomyces/*classification/genetics/*isolation & purification
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10661 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41923) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41923 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets |