Strain identifier

BacDive ID: 164382

Type strain: No

Species: Alistipes onderdonkii subsp. vulgaris

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; 3YCFAH16.

NCBI tax ID(s): 2585117 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164382

keywords: 16S sequence, Bacteria

description: Alistipes onderdonkii subsp. vulgaris JCM 32842 is a bacterium that was isolated from Feces of a woman in the forties.

NCBI tax id

  • NCBI tax id: 2585117
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: M. Sakamoto; RIKEN BRC-JCM, Japan; 3YCFAH16.

doi: 10.13145/bacdive164382.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Rikenellaceae
  • genus: Alistipes
  • species: Alistipes onderdonkii subsp. vulgaris
  • full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Alistipes

species: Alistipes onderdonkii subsp. vulgaris

full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Feces of a woman in the forties
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_959.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_110;96_474;97_648;98_749;99_959&stattab=map
  • Last taxonomy: Alistipes onderdonkii subclade
  • 16S sequence: LC468793
  • Sequence Identity:
  • Total samples: 177009
  • soil counts: 1356
  • aquatic counts: 5936
  • animal counts: 169152
  • plant counts: 565

Sequence information

16S sequences

  • @ref: 67770
  • description: Alistipes onderdonkii subsp. vulgaris 3YCFAH16 gene for 16S ribosomal RNA, partial sequence
  • accession: LC468793
  • length: 1458
  • database: nuccore
  • NCBI tax ID: 2585117

External links

@ref: 67770

culture collection no.: JCM 32842

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/