Strain identifier
BacDive ID: 164382
Type strain:
Species: Alistipes onderdonkii subsp. vulgaris
Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; 3YCFAH16.
NCBI tax ID(s): 2585117 (subspecies)
version 9 (current version)
General
@ref: 67770
BacDive-ID: 164382
keywords: 16S sequence, Bacteria
description: Alistipes onderdonkii subsp. vulgaris JCM 32842 is a bacterium that was isolated from Feces of a woman in the forties.
NCBI tax id
- NCBI tax id: 2585117
- Matching level: subspecies
strain history
- @ref: 67770
- history: M. Sakamoto; RIKEN BRC-JCM, Japan; 3YCFAH16.
doi: 10.13145/bacdive164382.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Rikenellaceae
- genus: Alistipes
- species: Alistipes onderdonkii subsp. vulgaris
- full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Rikenellaceae
genus: Alistipes
species: Alistipes onderdonkii subsp. vulgaris
full scientific name: Alistipes onderdonkii subsp. vulgaris Sakamoto et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Feces of a woman in the forties
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_959.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_110;96_474;97_648;98_749;99_959&stattab=map
- Last taxonomy: Alistipes onderdonkii subclade
- 16S sequence: LC468793
- Sequence Identity:
- Total samples: 177009
- soil counts: 1356
- aquatic counts: 5936
- animal counts: 169152
- plant counts: 565
Sequence information
16S sequences
- @ref: 67770
- description: Alistipes onderdonkii subsp. vulgaris 3YCFAH16 gene for 16S ribosomal RNA, partial sequence
- accession: LC468793
- length: 1458
- database: nuccore
- NCBI tax ID: 2585117
External links
@ref: 67770
culture collection no.: JCM 32842
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |