Strain identifier
BacDive ID: 164347
Type strain: 
Species: Paraclostridium dentum
Strain history: S. Korpole; MTCC, India; SKVG24.
NCBI tax ID(s): 2662455 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 164347
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paraclostridium dentum JCM 32760 is a mesophilic bacterium that was isolated from Subgingival dental plaque samples of patients suffering from periodontitis.
NCBI tax id
- NCBI tax id: 2662455
- Matching level: species
strain history
- @ref: 67770
- history: S. Korpole; MTCC, India; SKVG24.
doi: 10.13145/bacdive164347.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Paraclostridium
- species: Paraclostridium dentum
- full scientific name: Paraclostridium dentum Urvashi et al. 2020
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Paraclostridium
species: Paraclostridium dentum
full scientific name: Paraclostridium dentum Urvashi et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Subgingival dental plaque samples of patients suffering from periodontitis
- geographic location: Chandigarh
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_532.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_337;97_376;98_432;99_532&stattab=map
- Last taxonomy: Paeniclostridium
- 16S sequence: MF161401
- Sequence Identity:
- Total samples: 51554
- soil counts: 14269
- aquatic counts: 9424
- animal counts: 25127
- plant counts: 2734
Sequence information
16S sequences
- @ref: 67770
- description: Paraclostridium dentum strain SKVG24 16S ribosomal RNA gene, partial sequence
- accession: MF161401
- length: 1403
- database: nuccore
- NCBI tax ID: 2662455
Genome sequences
- @ref: 67770
- description: Paraclostridium dentum SKVG24
- accession: GCA_012922555
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2662455
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 71.637 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 88.943 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.597 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 72.64 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.052 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 75.553 | no |
External links
@ref: 67770
culture collection no.: JCM 32760, MTCC 12836
literature
- topic: Phylogeny
- Pubmed-ID: 32758667
- title: Paraclostridium dentum, a novel species with pathogenic features isolated from human dental plaque sample.
- authors: Urvashi, Choksket S, Jain A, Sharma D, Grover V, Korpole S
- journal: Anaerobe
- DOI: 10.1016/j.anaerobe.2020.102239
- year: 2020
- mesh: Bacterial Typing Techniques, Clostridiales/*classification/isolation & purification/pathogenicity/*physiology, Dental Plaque/*microbiology, Genome, Bacterial, Genomics/methods, Humans, Nucleic Acid Hybridization, Periodontitis/*microbiology, RNA, Ribosomal, 16S, Virulence/genetics, Virulence Factors/genetics
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |