Strain identifier

BacDive ID: 164316

Type strain: Yes

Species: Actinomadura harenae

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-Ht49.

NCBI tax ID(s): 2483351 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164316

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Actinomadura harenae JCM 32659 is a spore-forming bacterium that was isolated from Sea sand from Wuzhizhou Island in Sanya.

NCBI tax id

  • NCBI tax id: 2483351
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-Ht49.

doi: 10.13145/bacdive164316.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura harenae
  • full scientific name: Actinomadura harenae Hu et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura harenae

full scientific name: Actinomadura harenae Hu et al. 2020

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.57
6948090.588positive

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes95.914

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H4), MK-9(H8)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Sea sand from Wuzhizhou Island in Sanya
  • geographic location: Hainan Province
  • country: China
  • origin.country: CHN
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Actinomadura harenae 16S ribosomal RNA gene, partial sequence
  • accession: MK203829
  • length: 1519
  • database: nuccore
  • NCBI tax ID: 2483351

Genome sequences

  • @ref: 67770
  • description: Actinomadura harenae NEAU-Ht49
  • accession: GCA_003696215
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2483351

GC content

  • @ref: 67770
  • GC-content: 72.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.57no
flagellatedno98.184no
gram-positiveyes90.588no
anaerobicno98.979no
aerobicyes91.503no
halophileno94.123no
spore-formingyes95.914no
glucose-utilyes89.791no
thermophileno97.503yes
glucose-fermentno92.476no

External links

@ref: 67770

culture collection no.: JCM 32659, CGMCC 4.7499

literature

  • topic: Phylogeny
  • Pubmed-ID: 31671050
  • title: Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.
  • authors: Hu J, Han C, Yu B, Zhao J, Guo X, Shen Y, Wang X, Xiang W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003819
  • year: 2020
  • mesh: Actinomycetales/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1