Strain identifier

BacDive ID: 16430

Type strain: Yes

Species: Streptomyces paucisporeus

Strain Designation: 1413

Strain history: Y. Huang 1413.

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General

@ref: 15749

BacDive-ID: 16430

DSM-Number: 41946

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Streptomyces paucisporeus 1413 is an aerobe, spore-forming, mesophilic bacterium that was isolated from Dashao pine forest soil.

strain history

@refhistory
15749<- CGMCC; CGMCC 4.2025
67770Y. Huang 1413.

doi: 10.13145/bacdive16430.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces paucisporeus
  • full scientific name: Streptomyces paucisporeus Xu et al. 2006

  • synonyms

    • @ref: 20215
    • synonym: Actinacidiphila paucisporea

@ref: 15749

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces paucisporeus

full scientific name: Streptomyces paucisporeus Xu et al. 2006 emend. Nouioui et al. 2018

strain designation: 1413

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31645positiverod-shapedno
69480positive100

pigmentation

  • @ref: 31645
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15749
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15749positivegrowth28mesophilic
31645positivegrowth20-37
31645positiveoptimum30-37mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
31645positivegrowth4.5-7.5
31645positiveoptimum5.5-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31645
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31645yes
69481yes100
69480yes100

observation

@refobservation
31645aggregates in chains
67770quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3164516449alanine+carbon source
3164529016arginine+carbon source
3164535391aspartate+carbon source
3164517057cellobiose+carbon source
3164528260galactose+carbon source
3164517234glucose+carbon source
3164529987glutamate+carbon source
3164529864mannitol+carbon source
3164528044phenylalanine+carbon source
3164530911sorbitol+carbon source
316454853esculin+hydrolysis

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15749Dashao pine forest soilGuandu, Yunnan ProvinceChinaCHNAsia
67770Dashao pine-forest soilGuandu, Yunnan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 15749
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15749
  • description: Streptomyces paucisporeus strain 1413 16S ribosomal RNA gene, partial sequence
  • accession: AY876943
  • length: 1446
  • database: ena
  • NCBI tax ID: 310782

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces paucisporeus strain CGMCC 4.2025310782.3wgspatric310782
66792Streptomyces paucisporeus CGMCC 4.20252667527448draftimg310782
67770Actinacidiphila paucisporea CGMCC 4.2025GCA_900142575scaffoldncbi310782

GC content

@refGC-contentmethod
1574974.8
6777072.3genome sequence analysis
6777074.8thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes90.731no
anaerobicno99.098yes
halophileno95.51no
spore-formingyes93.648yes
glucose-utilyes89.076yes
motileno95.294no
flagellatedno98.126yes
aerobicyes92.409no
thermophileno98.462no
glucose-fermentno88.052no

External links

@ref: 15749

culture collection no.: DSM 41946, CGMCC 4.2025, JCM 13276, CIP 109250, NBRC 102072

straininfo link

  • @ref: 85471
  • straininfo: 291005

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16627663Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov.Xu C, Wang L, Cui Q, Huang Y, Liu Z, Zheng G, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.63959-02006Bacterial Typing Techniques, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiologyGenetics
Phylogeny27263023Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-016-0722-52016Actinobacteria/classification/genetics/isolation & purification/metabolism, Bryophyta/*microbiology, Cell Wall/metabolism, China, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Endophytes, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Vitamin K 2/analogs & derivatives/analysis/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
15749Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41946)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41946
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31645Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2792828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85471Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291005.1StrainInfo: A central database for resolving microbial strain identifiers