Strain identifier

BacDive ID: 164280

Type strain: Yes

Species: Leptospira ellinghausenii

Strain history: T. Masuzawa; Chiba Inst. of Sci., Japan; E18.

NCBI tax ID(s): 1917822 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 164280

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Leptospira ellinghausenii JCM 32516 is a mesophilic bacterium that was isolated from Soil collected from a park in Sukagawa City.

NCBI tax id

  • NCBI tax id: 1917822
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Masuzawa; Chiba Inst. of Sci., Japan; E18.

doi: 10.13145/bacdive164280.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Leptospira
  • species: Leptospira ellinghausenii
  • full scientific name: Leptospira ellinghausenii Masuzawa et al. 2019
  • synonyms

    • @ref: 20215
    • synonym: Leptospira ellinghausenii

@ref: 67770

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Leptospirales

family: Leptospiraceae

genus: Leptospira

species: Leptospira ellinghausenii

full scientific name: Leptospira ellinghausenii Masuzawa et al. 2019

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil collected from a park in Sukagawa City
  • geographic location: Fukushima Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_3187.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15829;96_1660;97_1987;98_2443;99_3187&stattab=map
  • Last taxonomy: Leptospira
  • 16S sequence: LC196063
  • Sequence Identity:
  • Total samples: 4961
  • soil counts: 824
  • aquatic counts: 3560
  • animal counts: 382
  • plant counts: 195

Sequence information

16S sequences

  • @ref: 67770
  • description: Leptospira sp. E18 gene for 16S rRNA, partial sequence
  • accession: LC196063
  • length: 1422
  • database: ena
  • NCBI tax ID: 1917822

Genome sequences

  • @ref: 67770
  • description: Leptospira ellinghausenii E18
  • accession: GCA_003114815
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1917822

GC content

  • @ref: 67770
  • GC-content: 37.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno65.51no
gram-positiveno98.348no
anaerobicno94.219no
halophileno92.804no
spore-formingno92.53no
glucose-utilyes60.237no
aerobicyes73.359no
thermophileno98.26yes
motileyes88.948no
glucose-fermentno88.726no

External links

@ref: 67770

culture collection no.: JCM 32516, CIP 111618

literature

  • topic: Phylogeny
  • Pubmed-ID: 30817029
  • title: Molecular and phenotypic characterization of Leptospira johnsonii sp. nov., Leptospira ellinghausenii sp. nov. and Leptospira ryugenii sp. nov. isolated from soil and water in Japan.
  • authors: Masuzawa T, Saito M, Nakao R, Nikaido Y, Matsumoto M, Ogawa M, Yokoyama M, Hidaka Y, Tomita J, Sakakibara K, Suzuki K, Yasuda S, Sato H, Yamaguchi M, Yoshida SI, Koizumi N, Kawamura Y
  • journal: Microbiol Immunol
  • DOI: 10.1111/1348-0421.12671
  • year: 2019
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Japan, Leptospira/*classification/genetics/*isolation & purification, Male, Mice, Mice, Transgenic, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Water Microbiology, Whole Genome Sequencing
  • topic2: Genetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/