Strain identifier
BacDive ID: 164280
Type strain:
Species: Leptospira ellinghausenii
Strain history: T. Masuzawa; Chiba Inst. of Sci., Japan; E18.
NCBI tax ID(s): 1917822 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164280
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Leptospira ellinghausenii JCM 32516 is a mesophilic bacterium that was isolated from Soil collected from a park in Sukagawa City.
NCBI tax id
- NCBI tax id: 1917822
- Matching level: species
strain history
- @ref: 67770
- history: T. Masuzawa; Chiba Inst. of Sci., Japan; E18.
doi: 10.13145/bacdive164280.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Leptospira
- species: Leptospira ellinghausenii
- full scientific name: Leptospira ellinghausenii Masuzawa et al. 2019
synonyms
- @ref: 20215
- synonym: Leptospira ellinghausenii
@ref: 67770
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Leptospirales
family: Leptospiraceae
genus: Leptospira
species: Leptospira ellinghausenii
full scientific name: Leptospira ellinghausenii Masuzawa et al. 2019
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil collected from a park in Sukagawa City
- geographic location: Fukushima Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_3187.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15829;96_1660;97_1987;98_2443;99_3187&stattab=map
- Last taxonomy: Leptospira
- 16S sequence: LC196063
- Sequence Identity:
- Total samples: 4961
- soil counts: 824
- aquatic counts: 3560
- animal counts: 382
- plant counts: 195
Sequence information
16S sequences
- @ref: 67770
- description: Leptospira sp. E18 gene for 16S rRNA, partial sequence
- accession: LC196063
- length: 1422
- database: ena
- NCBI tax ID: 1917822
Genome sequences
- @ref: 67770
- description: Leptospira ellinghausenii E18
- accession: GCA_003114815
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1917822
GC content
- @ref: 67770
- GC-content: 37.4
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 65.51 | no |
gram-positive | no | 98.348 | no |
anaerobic | no | 94.219 | no |
halophile | no | 92.804 | no |
spore-forming | no | 92.53 | no |
glucose-util | yes | 60.237 | no |
aerobic | yes | 73.359 | no |
thermophile | no | 98.26 | yes |
motile | yes | 88.948 | no |
glucose-ferment | no | 88.726 | no |
External links
@ref: 67770
culture collection no.: JCM 32516, CIP 111618
literature
- topic: Phylogeny
- Pubmed-ID: 30817029
- title: Molecular and phenotypic characterization of Leptospira johnsonii sp. nov., Leptospira ellinghausenii sp. nov. and Leptospira ryugenii sp. nov. isolated from soil and water in Japan.
- authors: Masuzawa T, Saito M, Nakao R, Nikaido Y, Matsumoto M, Ogawa M, Yokoyama M, Hidaka Y, Tomita J, Sakakibara K, Suzuki K, Yasuda S, Sato H, Yamaguchi M, Yoshida SI, Koizumi N, Kawamura Y
- journal: Microbiol Immunol
- DOI: 10.1111/1348-0421.12671
- year: 2019
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Japan, Leptospira/*classification/genetics/*isolation & purification, Male, Mice, Mice, Transgenic, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Water Microbiology, Whole Genome Sequencing
- topic2: Genetics
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |