Strain identifier
BacDive ID: 164279
Type strain: 
Species: Leptospira johnsonii
Strain history: T. Masuzawa; Chiba Inst. of Sci., Japan; E8.
NCBI tax ID(s): 1917820 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164279
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Leptospira johnsonii JCM 32515 is a mesophilic bacterium that was isolated from Rice field soil collected from Kamisu City.
NCBI tax id
- NCBI tax id: 1917820
- Matching level: species
strain history
- @ref: 67770
- history: T. Masuzawa; Chiba Inst. of Sci., Japan; E8.
doi: 10.13145/bacdive164279.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Leptospira
- species: Leptospira johnsonii
- full scientific name: Leptospira johnsonii Masuzawa et al. 2019
synonyms
- @ref: 20215
- synonym: Leptospira johnsonii
@ref: 67770
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Leptospirales
family: Leptospiraceae
genus: Leptospira
species: Leptospira johnsonii
full scientific name: Leptospira johnsonii Masuzawa et al. 2019
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rice field soil collected from Kamisu City
- geographic location: Ibaraki Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_5234.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_26;96_1119;97_1314;98_1584;99_5234&stattab=map
- Last taxonomy: Leptospira
- 16S sequence: LC196061
- Sequence Identity:
- Total samples: 3114
- soil counts: 866
- aquatic counts: 1113
- animal counts: 433
- plant counts: 702
Sequence information
16S sequences
- @ref: 67770
- description: Leptospira sp. E8 gene for 16S rRNA, partial sequence
- accession: LC196061
- length: 1431
- database: ena
- NCBI tax ID: 1917820
Genome sequences
- @ref: 67770
- description: Leptospira johnsonii E8
- accession: GCA_003112675
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1917820
GC content
- @ref: 67770
- GC-content: 41.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 66.516 | no |
| gram-positive | no | 97.803 | no |
| anaerobic | no | 97.522 | no |
| halophile | no | 91.855 | no |
| spore-forming | no | 92.962 | no |
| glucose-util | yes | 64.545 | no |
| aerobic | yes | 84.225 | no |
| thermophile | no | 91.363 | yes |
| motile | yes | 86.618 | no |
| glucose-ferment | no | 89.374 | no |
External links
@ref: 67770
culture collection no.: JCM 32515, CIP 111620
literature
- topic: Phylogeny
- Pubmed-ID: 30817029
- title: Molecular and phenotypic characterization of Leptospira johnsonii sp. nov., Leptospira ellinghausenii sp. nov. and Leptospira ryugenii sp. nov. isolated from soil and water in Japan.
- authors: Masuzawa T, Saito M, Nakao R, Nikaido Y, Matsumoto M, Ogawa M, Yokoyama M, Hidaka Y, Tomita J, Sakakibara K, Suzuki K, Yasuda S, Sato H, Yamaguchi M, Yoshida SI, Koizumi N, Kawamura Y
- journal: Microbiol Immunol
- DOI: 10.1111/1348-0421.12671
- year: 2019
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Japan, Leptospira/*classification/genetics/*isolation & purification, Male, Mice, Mice, Transgenic, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Water Microbiology, Whole Genome Sequencing
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |