Strain identifier
BacDive ID: 164261
Type strain: 
Species: Pseudomonas pyomelaninifaciens
Strain history: R. Chakraborty; Dept. of Biotechnol., Univ. of North Bengal, India; MR 02.
General
@ref: 67770
BacDive-ID: 164261
keywords: genome sequence, 16S sequence, aerobe, mesophilic, Gram-negative
description: Pseudomonas pyomelaninifaciens JCM 32458 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Mahananda River at Siliguri.
strain history
- @ref: 67770
- history: R. Chakraborty; Dept. of Biotechnol., Univ. of North Bengal, India; MR 02.
doi: 10.13145/bacdive164261.20250331.9.3
Name and taxonomic classification
@ref: 67770
phylum: Not assigned to order
class: Not assigned to order
order: Not assigned to order
family: Not assigned to family
genus: Pseudomonas
species: Pseudomonas pyomelaninifaciens
full scientific name: Pseudomonas pyomelaninifaciens
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.5 |
| 125438 | negative | 99 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125438
- oxygen tolerance: aerobe
- confidence: 93.875
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.2
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mahananda River at Siliguri
- geographic location: West Bengal
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_239.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: MF401548
- Sequence Identity:
- Total samples: 2133
- soil counts: 368
- aquatic counts: 543
- animal counts: 799
- plant counts: 423
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas sp. MR 02 16S ribosomal RNA gene, partial sequence
- accession: MF401548
- length: 1501
- database: nuccore
- NCBI tax ID: 2048282
Genome sequences
- @ref: 67770
- description: Pseudomonas sp. MR 02
- accession: GCA_002797475
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2048282
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.661 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 93.875 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.59 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.986 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 87.939 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 89.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 83.8 |
External links
@ref: 67770
culture collection no.: JCM 32458, KCTC 62307
Reference
| @id | authors | doi/url | title |
|---|---|---|---|
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |