Strain identifier

BacDive ID: 16426

Type strain: Yes

Species: Streptomyces seranimatus

Strain history: <- S.-K. Tang; YIM 45720 <- Y.-X. Wang

NCBI tax ID(s): 408067 (species)

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General

@ref: 10646

BacDive-ID: 16426

DSM-Number: 41883

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces seranimatus DSM 41883 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil from the rhizophere of Cephalotaxus fortunei.

NCBI tax id

  • NCBI tax id: 408067
  • Matching level: species

strain history

  • @ref: 10646
  • history: <- S.-K. Tang; YIM 45720 <- Y.-X. Wang

doi: 10.13145/bacdive16426.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces seranimatus
  • full scientific name: Streptomyces seranimatus corrig. Wang et al. 2012

  • synonyms

    @refsynonym
    20215Streptomyces serianimatus
    20215Yinghuangia seranimata

@ref: 10646

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Yinghuangia

species: Yinghuangia seranimata

full scientific name: Yinghuangia seranimata (Wang et al. 2012) Komaki and Tamura 2019

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69304Grey white (9002)ISP 3
69304Ivory (1014)suter with tyrosine
69304Light ivory (1015)suter without tyrosine
69304Oyster white (1013)ISP 5
69304Sand yellow (1002)ISP 2
69304Sand yellow (1002)ISP 6
69304Sand yellow (1002), light ivory (1015)ISP 4
69304Traffic white (9016)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69304yesAerial myceliumPlatinum grey (7036)ISP 2
69304noAerial myceliumISP 3
69304noAerial myceliumISP 4
69304noAerial myceliumISP 5
69304noAerial myceliumISP 6
69304noAerial myceliumISP 7
69304noAerial myceliumsuter with tyrosine
69304noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69304noMelanin
69304nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
10646https://www.dsmz.de/microorganisms/photos/DSM_41883.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69304DSM_41883_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69304DSM_41883_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 10646
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 10646
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69304
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6930422599arabinose-growth
6930462968cellulose-growth
6930428757fructose+growth
6930417234glucose+growth
6930417268inositol-growth
6930437684mannose-growth
6930416634raffinose-growth
6930426546rhamnose+growth
6930417992sucrose+/-growth
6930418222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69304+--+-++-+----------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69304++/-+/--+++/---++-+-+++--

Isolation, sampling and environmental information

isolation

  • @ref: 10646
  • sample type: soil from the rhizophere of Cephalotaxus fortunei
  • host species: Cephalotaxus fortunei
  • geographic location: Yunnan Province, Xishuangbanna
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Shrub (Scrub)
#Host#Plants#Tree
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_34844.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_8272;97_9959;98_12244;99_34844&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ997046
  • Sequence Identity:
  • Total samples: 47
  • soil counts: 27
  • aquatic counts: 2
  • plant counts: 18

Safety information

risk assessment

  • @ref: 10646
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 10646
  • description: Streptomyces seranimatus strain YIM 45720 16S ribosomal RNA gene, partial sequence
  • accession: DQ997046
  • length: 1410
  • database: ena
  • NCBI tax ID: 408067

GC content

  • @ref: 10646
  • GC-content: 70
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 10646

culture collection no.: DSM 41883, CCTCC AA 206006, YIM 45720

straininfo link

  • @ref: 85467
  • straininfo: 294142

literature

  • topic: Phylogeny
  • Pubmed-ID: 31125301
  • title: Transfer of Streptomyces catbensis Sakiyama et al. 2014 and Streptomyces seranimatus Wang et al. 2012 to Yinghuangia catbensis comb. nov. and Yinghuangia seranimata comb. nov.
  • authors: Komaki H, Tamura T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003458
  • year: 2019
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Lipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitle
10646Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41883)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41883
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69304Wink, J.https://cdn.dsmz.de/wink/DSM%2041883.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85467Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID294142.1StrainInfo: A central database for resolving microbial strain identifiers