Strain identifier
BacDive ID: 164257
Type strain: 
Species: Cellulosimicrobium funkei
Strain history: LMG 28646 <-- V. R. Sultanpuram; Mahatma Gandhi Univ., India; 3bp.
NCBI tax ID(s): 1612203 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164257
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Cellulosimicrobium funkei JCM 32432 is a mesophilic bacterium that was isolated from Panagal freshwater reservoir at Nalgonda.
NCBI tax id
- NCBI tax id: 1612203
- Matching level: species
strain history
- @ref: 67770
- history: LMG 28646 <-- V. R. Sultanpuram; Mahatma Gandhi Univ., India; 3bp.
doi: 10.13145/bacdive164257.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Cellulosimicrobium
- species: Cellulosimicrobium funkei
- full scientific name: Cellulosimicrobium funkei Brown et al. 2006
synonyms
- @ref: 20215
- synonym: Cellulosimicrobium aquatile
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Promicromonosporaceae
genus: Cellulosimicrobium
species: Cellulosimicrobium funkei
full scientific name: Cellulosimicrobium funkei Brown et al. 2006
type strain: no
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.5
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 93
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Panagal freshwater reservoir at Nalgonda
- geographic location: Telangana
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_256.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_195;98_218;99_256&stattab=map
- Last taxonomy: Cellulosimicrobium
- 16S sequence: LN812019
- Sequence Identity:
- Total samples: 5475
- soil counts: 1873
- aquatic counts: 417
- animal counts: 1680
- plant counts: 1505
Sequence information
16S sequences
- @ref: 67770
- description: Cellulosimicrobium aquatile partial 16S rRNA gene,type strain 3bpT
- accession: LN812019
- length: 1436
- database: nuccore
- NCBI tax ID: 1612203
Genome sequences
- @ref: 67770
- description: Cellulosimicrobium aquatile 3bp
- accession: GCA_900155925
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1612203
GC content
- @ref: 67770
- GC-content: 73.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.365 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.2 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.057 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 55.163 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 67.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 93 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 86.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 100 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.5 |
External links
@ref: 67770
culture collection no.: JCM 32432, KCTC 39527, LMG 28646, MCC 2761
literature
- topic: Phylogeny
- Pubmed-ID: 26373417
- title: Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.
- authors: Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0588-y
- year: 2015
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, India, Lysine/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |