Strain identifier
BacDive ID: 164231
Type strain: 
Species: Clostridium fessum
Strain history: G. Ko; Seoul Natl. Univ., South Korea; SNUG30386.
NCBI tax ID(s): 2126740 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164231
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Clostridium fessum JCM 32258 is a mesophilic bacterium that was isolated from Fecal sample of a healthy Korean human.
NCBI tax id
- NCBI tax id: 2126740
- Matching level: species
strain history
- @ref: 67770
- history: G. Ko; Seoul Natl. Univ., South Korea; SNUG30386.
doi: 10.13145/bacdive164231.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium fessum
- full scientific name: Clostridium fessum Seo et al. 2021
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium fessum
full scientific name: Clostridium fessum Seo et al. 2021
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Fecal sample of a healthy Korean human
taxonmaps
- @ref: 69479
- File name: preview.99_16525.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_8446;97_10166;98_12482;99_16525&stattab=map
- Last taxonomy: Lachnospiraceae
- 16S sequence: KY992934
- Sequence Identity:
- Total samples: 107245
- soil counts: 371
- aquatic counts: 1948
- animal counts: 104857
- plant counts: 69
Sequence information
16S sequences
- @ref: 67770
- description: Erysipelatoclostridium sp. SNUG30386 16S ribosomal RNA gene, partial sequence
- accession: KY992934
- length: 1401
- database: ena
- NCBI tax ID: 2126740
Genome sequences
- @ref: 67770
- description: Clostridium fessum SNUG30386
- accession: GCA_003024715
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2126740
GC content
- @ref: 67770
- GC-content: 48.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 92.504 | no |
| gram-positive | yes | 85.389 | no |
| anaerobic | yes | 99.701 | no |
| halophile | no | 77.821 | no |
| spore-forming | no | 63.129 | no |
| glucose-util | yes | 82.99 | no |
| aerobic | no | 97.99 | no |
| thermophile | no | 97.738 | no |
| motile | no | 83.938 | no |
| glucose-ferment | yes | 66.119 | no |
External links
@ref: 67770
culture collection no.: JCM 32258, KCTC 15633
literature
- topic: Phylogeny
- Pubmed-ID: 33253079
- title: Clostridium fessum sp. nov., isolated from human faeces.
- authors: Seo B, Jeon K, Baek I, Lee YM, Baek K, Ko G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004579
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Clostridium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |