Strain identifier
BacDive ID: 164231
Type strain: 
Species: Clostridium fessum
Strain history: G. Ko; Seoul Natl. Univ., South Korea; SNUG30386.
NCBI tax ID(s): 2126740 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164231
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Clostridium fessum JCM 32258 is a mesophilic bacterium that was isolated from Fecal sample of a healthy Korean human.
NCBI tax id
- NCBI tax id: 2126740
- Matching level: species
strain history
- @ref: 67770
- history: G. Ko; Seoul Natl. Univ., South Korea; SNUG30386.
doi: 10.13145/bacdive164231.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium fessum
- full scientific name: Clostridium fessum Seo et al. 2021
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium fessum
full scientific name: Clostridium fessum Seo et al. 2021
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 98.5
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Fecal sample of a healthy Korean human
taxonmaps
- @ref: 69479
- File name: preview.99_16525.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_8446;97_10166;98_12482;99_16525&stattab=map
- Last taxonomy: Lachnospiraceae
- 16S sequence: KY992934
- Sequence Identity:
- Total samples: 107245
- soil counts: 371
- aquatic counts: 1948
- animal counts: 104857
- plant counts: 69
Sequence information
16S sequences
- @ref: 67770
- description: Clostridium fessum strain SNUG30386 16S ribosomal RNA gene, partial sequence
- accession: KY992934
- length: 1401
- database: nuccore
- NCBI tax ID: 2126740
Genome sequences
- @ref: 67770
- description: Clostridium fessum SNUG30386
- accession: GCA_003024715
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2126740
GC content
- @ref: 67770
- GC-content: 48.3
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 68.641 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.899 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.74 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 53.217 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.4 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 84.795 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 89.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 82.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 70.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 98.5 |
External links
@ref: 67770
culture collection no.: JCM 32258, KCTC 15633
literature
- topic: Phylogeny
- Pubmed-ID: 33253079
- title: Clostridium fessum sp. nov., isolated from human faeces.
- authors: Seo B, Jeon K, Baek I, Lee YM, Baek K, Ko G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004579
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Clostridium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |