Strain identifier

BacDive ID: 1642

Type strain: Yes

Species: Bartonella rattaustraliani

Strain Designation: AUST/NH4

Strain history: CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4

NCBI tax ID(s): 481139 (species)

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General

@ref: 17243

BacDive-ID: 1642

DSM-Number: 23500

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Bartonella rattaustraliani AUST/NH4 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from blood from rattus tunneyi.

NCBI tax id

  • NCBI tax id: 481139
  • Matching level: species

strain history

@refhistory
401102005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4
17243<- CCUG <- P.-E. Fournier; AUST/NH4 <- V.A.K.B. Gundi
122143CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4

doi: 10.13145/bacdive1642.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella rattaustraliani
  • full scientific name: Bartonella rattaustraliani Gundi et al. 2009

@ref: 17243

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella rattaustraliani

full scientific name: Bartonella rattaustraliani Gundi et al. 2009

strain designation: AUST/NH4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilitycell shape
23361negative1-2 µm0.5 µmno
122143negativenorod-shaped

colony morphology

@reftype of hemolysishemolysis abilitycolony sizecolony colorcolony shapeincubation periodmedium used
17243alpha/beta1
233610.5 mmwhiteirregular7 daysColumbia agar with 5 % sheep blood
594454 days
122143

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17243COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23361Columbia agar with 5 % sheep bloodyes
40110MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122143CIP Medium 6-Boites-Bioradyeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6-Boites-Biorad
122143CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
17243positivegrowth37mesophilic
23361positivegrowth37mesophilic
40110positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17243microaerophile
59445microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12214317632nitrate-reduction
12214316301nitrite-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837727897tryptophan-energy source

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
2336128001vancomycinyesyes
2336122507aminoglycoside antibioticyesyes
2336150845doxycyclineyesyes
2336125105macrolide antibioticyesyes
2336128077rifampicinyesyes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12214335581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
17243catalase-1.11.1.6
17243cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377beta-lactamase-3.5.2.6
122143oxidase-
122143alcohol dehydrogenase-1.1.1.1
122143catalase-1.11.1.6
122143lysine decarboxylase-4.1.1.18
122143ornithine decarboxylase-4.1.1.17
122143urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122143--++-++-+-----------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
17243-----+/--------
17243------+/-------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling dateisolation date
17243blood from rattus tunneyiRattus tunneyiQueenslandAustraliaAUSAustralia and Oceania
59445Rattus tunneyi bloodAustraliaAUSAustralia and Oceania1999
122143Animal, Blood, Rattus tunneyiQueenslandAustraliaAUSAustralia and Oceania2000

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_1245.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_1245&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: EU111749
  • Sequence Identity:
  • Total samples: 172
  • soil counts: 29
  • aquatic counts: 22
  • animal counts: 118
  • plant counts: 3

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
17243yes2Risk group (German classification)
1221432Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bartonella rattaustraliani strain AUST/NH4 16S-23S ribosomal RNA intergenic spacer, partial sequenceEU1117601487ena481139
17243Bartonella rattaustraliani strain AUST/NH4 16S ribosomal RNA gene, partial sequenceEU1117491410ena481139

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella rattaustraliani AUST/NH4GCA_000312565contigncbi1205681
66792Bartonella rattaustraliani AUST/NH41205681.4wgspatric1205681
66792Bartonella rattaustraliani AUST/NH42551306134draftimg1205681

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.167yes
gram-positiveno97.892no
anaerobicno97.563yes
aerobicno95.27no
halophileno60.632no
spore-formingno97.536no
thermophileno91.973yes
glucose-utilno50no
flagellatedno97.74yes
glucose-fermentno73.776no

External links

@ref: 17243

culture collection no.: DSM 23500, CCUG 52161, CIP 109051, CSUR B609

straininfo link

  • @ref: 71289
  • straininfo: 364824

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19628592Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats.Gundi VA, Taylor C, Raoult D, La Scola BInt J Syst Evol Microbiol10.1099/ijs.0.002865-02009Animals, Bacterial Proteins/genetics, Bartonella/*classification/genetics/*isolation & purification, Blood/microbiology, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiologyGenetics
Genetics23209252Genome sequence of Bartonella rattaustraliani, a bacterium isolated from an Australian rat.Merhej V, Croce O, Robert C, Rolain JM, Raoult DJ Bacteriol10.1128/JB.01924-122012Animals, Australia, Bartonella/*genetics/isolation & purification, Base Sequence, Blood/microbiology, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rats/*microbiology, Sequence Analysis, DNAPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17243Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23500)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23500
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23361Vijay A. K. B. Gundi, Carmel Taylor, Didier Raoult, Bernard La Scola10.1099/ijs.0.002865-0Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian ratsIJSEM 59: 2956-2961 200919628592
40110Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6749
59445Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52161)https://www.ccug.se/strain?id=52161
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71289Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364824.1StrainInfo: A central database for resolving microbial strain identifiers
122143Curators of the CIPCollection of Institut Pasteur (CIP 109051)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109051