Strain identifier
BacDive ID: 16419
Type strain: 
Species: Streptomyces prasinopilosus
Strain Designation: 4776
Strain history: CGMCC 4.3504 <-- W. Sun et al. 4776.
NCBI tax ID(s): 67344 (species)
version 8.1 (current version)
General
@ref: 10647
BacDive-ID: 16419
DSM-Number: 41884
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces prasinopilosus 4776 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil sample.
NCBI tax id
- NCBI tax id: 67344
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10647 | <- W. Sun; CGMCC 4.3504 <- T.-J. Yao |
| 67770 | CGMCC 4.3504 <-- W. Sun et al. 4776. |
doi: 10.13145/bacdive16419.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces prasinopilosus
- full scientific name: Streptomyces prasinopilosus Ettlinger et al. 1958 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces emeiensis
@ref: 10647
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces prasinopilosus
full scientific name: Streptomyces prasinopilosus Ettlinger et al. 1958 emend. Labeda et al. 2016
strain designation: 4776
type strain: no
Morphology
cell morphology
| @ref | gram stain | motility | confidence |
|---|---|---|---|
| 32082 | positive | ||
| 69480 | no | 94.171 | |
| 69480 | positive | 100 |
multimedia
- @ref: 10647
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41884.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 10647
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10647 | positive | growth | 28 | mesophilic |
| 32082 | positive | growth | 15-40 | |
| 32082 | positive | optimum | 27.5 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32082 | positive | growth | 5.5-9.5 | alkaliphile |
| 32082 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 32082
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 32082 | yes | |
| 69481 | yes | 100 |
| 69480 | yes | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32082 | NaCl | positive | growth | 0.01-5.0 % |
| 32082 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32082 | 22599 | arabinose | + | carbon source |
| 32082 | 23652 | dextrin | + | carbon source |
| 32082 | 17268 | myo-inositol | + | carbon source |
| 32082 | 28044 | phenylalanine | + | carbon source |
| 32082 | 16634 | raffinose | + | carbon source |
| 32082 | 33942 | ribose | + | carbon source |
| 32082 | 53424 | tween 20 | + | carbon source |
| 32082 | 53423 | tween 40 | + | carbon source |
| 32082 | 4853 | esculin | + | hydrolysis |
| 32082 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10647 | soil sample | Sichuan province, Emei mountain | China | CHN | Asia |
| 67770 | Soil from Emei Mountain | Sichuan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3632.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_1938;98_2384;99_3632&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: DQ462649
- Sequence Identity:
- Total samples: 145
- soil counts: 94
- aquatic counts: 3
- animal counts: 8
- plant counts: 40
Safety information
risk assessment
- @ref: 10647
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 10647
- description: Streptomyces emeiensis strain 4776 16S ribosomal RNA gene, partial sequence
- accession: DQ462649
- length: 1400
- database: ena
- NCBI tax ID: 67344
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces emeiensis strain CGMCC 4.3504 | 382503.6 | wgs | patric | 67344 |
| 66792 | Streptomyces prasinopilosus CGMCC 4.3504 | 2663762722 | draft | img | 67344 |
| 67770 | Streptomyces prasinopilosus CGMCC 4.3504 | GCA_900101585 | scaffold | ncbi | 67344 |
| 67770 | Streptomyces prasinopilosus NRRL B-24621 | GCA_001418395 | scaffold | ncbi | 67344 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 10647 | 70.8 | |
| 67770 | 70.8 | thermal denaturation, midpoint method (Tm) |
| 67770 | 72.9 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 92.602 | yes |
| anaerobic | no | 99.331 | yes |
| halophile | no | 88.613 | no |
| spore-forming | yes | 94.566 | no |
| glucose-util | yes | 89.357 | no |
| aerobic | yes | 93.715 | yes |
| motile | no | 94.02 | no |
| flagellated | no | 97.526 | no |
| thermophile | no | 95.688 | yes |
| glucose-ferment | no | 88.112 | no |
External links
@ref: 10647
culture collection no.: DSM 41884, CGMCC 4.3504, NRRL B-24621, JCM 15479
straininfo link
- @ref: 85462
- straininfo: 400879
literature
- topic: Phylogeny
- Pubmed-ID: 17625208
- title: Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.
- authors: Sun W, Huang Y, Zhang YQ, Liu ZH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64934-0
- year: 2007
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 10647 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41884) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41884 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32082 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28328 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85462 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400879.1 | StrainInfo: A central database for resolving microbial strain identifiers |