Strain identifier

BacDive ID: 164160

Type strain: No

Species: Bifidobacterium longum subsp. longum

Strain history: S. Fukiya; Res. Fac. of Agric., Hokkaido Univ., Japan; 105-A <-- Y. Kano <-- T. Mitsuoka.

NCBI tax ID(s): 1679 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164160

keywords: genome sequence, Bacteria

description: Bifidobacterium longum subsp. longum JCM 31944 is a bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 1679
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: S. Fukiya; Res. Fac. of Agric., Hokkaido Univ., Japan; 105-A <-- Y. Kano <-- T. Mitsuoka.

doi: 10.13145/bacdive164160.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. longum
  • full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. longum

full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human feces

Sequence information

Genome sequences

  • @ref: 67770
  • description: Bifidobacterium longum 105-A
  • accession: GCA_000829295
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 216816

External links

@ref: 67770

culture collection no.: JCM 31944

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics29934330A Transposon Mutagenesis System for Bifidobacterium longum subsp. longum Based on an IS3 Family Insertion Sequence, ISBlo11.Sakanaka M, Nakakawaji S, Nakajima S, Fukiya S, Abe A, Saburi W, Mori H, Yokota AAppl Environ Microbiol10.1128/AEM.00824-182018Bifidobacterium longum/*genetics, DNA Transposable Elements/*genetics, Gastrointestinal Microbiome/*genetics, Genome, Bacterial/genetics, Humans, Intestines/microbiology, Isomaltose/analogs & derivatives/metabolism, Mutagenesis/*genetics, Plasmids/*genetics, Sequence Analysis, DNA, Transposases/genetics, Trehalose/metabolism, alpha-Glucosidases/geneticsPathogenicity
Pathogenicity34553672Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile.Hirano R, Sakanaka M, Yoshimi K, Sugimoto N, Eguchi S, Yamauchi Y, Nara M, Maeda S, Ami Y, Gotoh A, Katayama T, Iida N, Kato T, Ohno H, Fukiya S, Yokota A, Nishimoto M, Kitaoka M, Nakai H, Kurihara SGut Microbes10.1080/19490976.2021.19738352021ATP-Binding Cassette Transporters/metabolism, Animals, Bifidobacterium/genetics/*growth & development, Bifidobacterium longum subspecies infantis/genetics/*growth & development, Clostridioides difficile/*growth & development, Disaccharides/*pharmacology, Gastrointestinal Microbiome/drug effects, Humans, Intestines/microbiology, Male, Mice, Mice, Inbred C57BL, Prebiotics/*analysisMetabolism

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/