Strain identifier
BacDive ID: 164151
Type strain: 
Species: Tabrizicola algicola
Strain history: C.-Y. Ahn; KRIBB, South Korea; ETT8.
NCBI tax ID(s): 2709381 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 164151
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Tabrizicola algicola JCM 31893 is a Gram-negative bacterium that was isolated from Chemostat culture of microalga Ettlia sp. YC001.
NCBI tax id
- NCBI tax id: 2709381
- Matching level: species
strain history
- @ref: 67770
- history: C.-Y. Ahn; KRIBB, South Korea; ETT8.
doi: 10.13145/bacdive164151.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Tabrizicola
- species: Tabrizicola algicola
- full scientific name: Tabrizicola algicola Park et al. 2020
synonyms
- @ref: 20215
- synonym: Pseudotabrizicola algicola
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Tabrizicola
species: Tabrizicola algicola
full scientific name: Tabrizicola algicola Park et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.994
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chemostat culture of microalga Ettlia sp. YC001
- host species: Ettlia
Sequence information
16S sequences
- @ref: 67770
- description: Pseudotabrizicola algicola 16S ribosomal RNA gene, partial sequence
- accession: KY363643
- length: 1455
- database: nuccore
- NCBI tax ID: 1062
Genome sequences
- @ref: 67770
- description: Pseudotabrizicola algicola ETT8
- accession: GCA_010915705
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2709381
GC content
- @ref: 67770
- GC-content: 64.4
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.994 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.718 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.52 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.297 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.95 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 69.105 | no |
External links
@ref: 67770
culture collection no.: JCM 31893, KCTC 72206, MCC 4339
literature
- topic: Phylogeny
- Pubmed-ID: 33052083
- title: Tabrizicola algicola sp. nov. isolated from culture of microalga Ettlia sp.
- authors: Park CY, Chun SJ, Jin C, Le VV, Cui Y, Kim SY, Ahn CY, Oh HM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004508
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Chlorophyceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Microalgae/microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |