Strain identifier
BacDive ID: 16414
Type strain:
Species: Streptomyces panacagri
Strain history: <- ST Lee, KAIST
NCBI tax ID(s): 363862 (species)
General
@ref: 10534
BacDive-ID: 16414
DSM-Number: 41871
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces panacagri DSM 41871 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 363862
- Matching level: species
strain history
@ref | history |
---|---|
10534 | <- S.-T. Lee, KAIST; Gsoil 519 <- W.-T. Im |
67771 | <- ST Lee, KAIST |
doi: 10.13145/bacdive16414.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces panacagri
- full scientific name: Streptomyces panacagri Cui et al. 2012
@ref: 10534
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces panacagri
full scientific name: Streptomyces panacagri Cui et al. 2012
type strain: yes
Morphology
cell morphology
@ref | gram stain | motility |
---|---|---|
30145 | positive | no |
67771 | positive |
pigmentation
- @ref: 30145
- production: yes
multimedia
- @ref: 10534
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41871.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 10534
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10534 | positive | growth | 28 | mesophilic |
30145 | positive | growth | 20-30 | |
67771 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30145
- ability: positive
- type: growth
- pH: 5.5-8.5
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30145 | aerobe |
67771 | aerobe |
spore formation
- @ref: 30145
- spore formation: yes
halophily
- @ref: 30145
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-5 %
observation
- @ref: 67771
- observation: quinones: MK-9(H6)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30145 | 16193 | 3-hydroxybenzoate | + | carbon source |
30145 | 37054 | 3-hydroxybutyrate | + | carbon source |
30145 | 30089 | acetate | + | carbon source |
30145 | 15963 | ribitol | + | carbon source |
30145 | 16449 | alanine | + | carbon source |
30145 | 17057 | cellobiose | + | carbon source |
30145 | 16947 | citrate | + | carbon source |
30145 | 28757 | fructose | + | carbon source |
30145 | 28260 | galactose | + | carbon source |
30145 | 24265 | gluconate | + | carbon source |
30145 | 17234 | glucose | + | carbon source |
30145 | 29987 | glutamate | + | carbon source |
30145 | 17754 | glycerol | + | carbon source |
30145 | 28087 | glycogen | + | carbon source |
30145 | 27570 | histidine | + | carbon source |
30145 | 24996 | lactate | + | carbon source |
30145 | 17716 | lactose | + | carbon source |
30145 | 25115 | malate | + | carbon source |
30145 | 15792 | malonate | + | carbon source |
30145 | 17306 | maltose | + | carbon source |
30145 | 37684 | mannose | + | carbon source |
30145 | 506227 | N-acetylglucosamine | + | carbon source |
30145 | 18401 | phenylacetate | + | carbon source |
30145 | 28044 | phenylalanine | + | carbon source |
30145 | 17272 | propionate | + | carbon source |
30145 | 15361 | pyruvate | + | carbon source |
30145 | 17814 | salicin | + | carbon source |
30145 | 30911 | sorbitol | + | carbon source |
30145 | 17992 | sucrose | + | carbon source |
30145 | 26986 | threonine | + | carbon source |
30145 | 27082 | trehalose | + | carbon source |
30145 | 31011 | valerate | + | carbon source |
30145 | 17151 | xylitol | + | carbon source |
30145 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30145 | catalase | + | 1.11.1.6 |
30145 | gelatinase | + | |
30145 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
10534 | soil of a ginseng field | Pocheon province | Republic of Korea | KOR | Asia |
67771 | From soil of the ginseng field | Pocheon province | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 10534
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 10534
- description: Streptomyces panacagri gene for 16S rRNA, partial sequence, strain: Gsoil 519
- accession: AB245388
- length: 1492
- database: ena
- NCBI tax ID: 363862
GC content
@ref | GC-content | method |
---|---|---|
10534 | 71.8 | high performance liquid chromatography (HPLC) |
30145 | 71.8 |
External links
@ref: 10534
culture collection no.: DSM 41871, KCTC 19139, Gsoil 519
straininfo link
- @ref: 85459
- straininfo: 297708
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21571936 | Streptomyces panacagri sp. nov., isolated from soil of a ginseng field. | Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WT | Int J Syst Evol Microbiol | 10.1099/ijs.0.029942-0 | 2011 | Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 25269462 | Streptomyces bohaiensis sp. nov., a novel actinomycete isolated from Scomberomorus niphonius in the Bohai Sea. | Pan HQ, Cheng J, Zhang DF, Yu SY, Khieu TN, Son CK, Jiang Z, Hu JC, Li WJ | J Antibiot (Tokyo) | 10.1038/ja.2014.137 | 2014 | Animals, Base Composition/genetics, Carbohydrates/chemistry, Fatty Acids/chemistry, Lipids/chemistry, Multilocus Sequence Typing, Oceans and Seas, Perciformes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, RNA/methods, Streptomyces/*classification/genetics/isolation & purification | Transcriptome |
Phylogeny | 25391353 | Streptomyces alkalithermotolerans sp. nov., a novel alkaliphilic and thermotolerant actinomycete isolated from a soda lake. | Sultanpuram VR, Mothe T, Mohammed F | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0332-z | 2014 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, India, Lakes/*microbiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
10534 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41871) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41871 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30145 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26496 | 28776041 | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
85459 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297708.1 | StrainInfo: A central database for resolving microbial strain identifiers |