Strain identifier
BacDive ID: 164132
Type strain:
Species: Acetivibrio saccincola
Strain history: A. Kosugi; JIRCAS, Japan; A7.
NCBI tax ID(s): 1677857 (species)
General
@ref: 67770
BacDive-ID: 164132
DSM-Number: 104321
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Acetivibrio saccincola JCM 31827 is a thermophilic bacterium that was isolated from Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island.
NCBI tax id
- NCBI tax id: 1677857
- Matching level: species
strain history
- @ref: 67770
- history: A. Kosugi; JIRCAS, Japan; A7.
doi: 10.13145/bacdive164132.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio saccincola
- full scientific name: Acetivibrio saccincola (Koeck et al. 2016) Tindall 2019
synonyms
@ref synonym 20215 Herbivorax saccincola 20215 Hungateiclostridium saccincola
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio saccincola
full scientific name: Acetivibrio saccincola (Koeck et al. 2016) Tindall 2019
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_38629.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_196;96_18243;97_22512;98_28327;99_38629&stattab=map
- Last taxonomy: Acetivibrio saccincola subclade
- 16S sequence: KX714804
- Sequence Identity:
- Total samples: 7335
- soil counts: 4138
- aquatic counts: 988
- animal counts: 1026
- plant counts: 1183
Sequence information
16S sequences
- @ref: 67770
- description: Clostridium sp. strain A7 16S ribosomal RNA gene, partial sequence
- accession: KX714804
- length: 1485
- database: ena
- NCBI tax ID: 1506
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Herbivorax saccincola strain A7 | 1677857.4 | wgs | patric | 1677857 |
67770 | Acetivibrio saccincola A7 | GCA_002969215 | contig | ncbi | 1677857 |
GC content
- @ref: 67770
- GC-content: 34.9
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 60.091 | no |
gram-positive | yes | 71.145 | no |
anaerobic | yes | 99.656 | no |
aerobic | no | 97.962 | no |
halophile | no | 94.956 | no |
spore-forming | yes | 93.501 | no |
glucose-util | yes | 88.742 | no |
flagellated | no | 74.169 | no |
thermophile | yes | 98.314 | yes |
glucose-ferment | no | 51.087 | no |
External links
@ref: 67770
culture collection no.: JCM 31827, DSM 104321
literature
- topic: Genetics
- Pubmed-ID: 29482868
- title: Characterization and high-quality draft genome sequence of Herbivorax saccincola A7, an anaerobic, alkaliphilic, thermophilic, cellulolytic, and xylanolytic bacterium.
- authors: Aikawa S, Baramee S, Sermsathanaswadi J, Thianheng P, Tachaapaikoon C, Shikata A, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.01.010
- year: 2018
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Base Sequence, Cattle, Cellulose/*metabolism, *Clostridiales/classification/genetics/isolation & purification, Composting, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/microbiology, Genome, Bacterial/*genetics, Japan, Lignin/metabolism, Sequence Analysis, DNA
- topic2: Metabolism
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |