Strain identifier

BacDive ID: 164132

Type strain: No

Species: Acetivibrio saccincola

Strain history: A. Kosugi; JIRCAS, Japan; A7.

NCBI tax ID(s): 1677857 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 164132

DSM-Number: 104321

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Acetivibrio saccincola JCM 31827 is a thermophilic bacterium that was isolated from Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island.

NCBI tax id

  • NCBI tax id: 1677857
  • Matching level: species

strain history

  • @ref: 67770
  • history: A. Kosugi; JIRCAS, Japan; A7.

doi: 10.13145/bacdive164132.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio saccincola
  • full scientific name: Acetivibrio saccincola (Koeck et al. 2016) Tindall 2019
  • synonyms

    @refsynonym
    20215Herbivorax saccincola
    20215Hungateiclostridium saccincola

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Acetivibrio

species: Acetivibrio saccincola

full scientific name: Acetivibrio saccincola (Koeck et al. 2016) Tindall 2019

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Cellulose-degrading bacterial community inhabiting bovine manure compost on Ishigaki Island
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_38629.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_196;96_18243;97_22512;98_28327;99_38629&stattab=map
  • Last taxonomy: Acetivibrio saccincola subclade
  • 16S sequence: KX714804
  • Sequence Identity:
  • Total samples: 7335
  • soil counts: 4138
  • aquatic counts: 988
  • animal counts: 1026
  • plant counts: 1183

Sequence information

16S sequences

  • @ref: 67770
  • description: Clostridium sp. strain A7 16S ribosomal RNA gene, partial sequence
  • accession: KX714804
  • length: 1485
  • database: ena
  • NCBI tax ID: 1506

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Herbivorax saccincola strain A71677857.4wgspatric1677857
67770Acetivibrio saccincola A7GCA_002969215contigncbi1677857

GC content

  • @ref: 67770
  • GC-content: 34.9
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes60.091no
gram-positiveyes71.145no
anaerobicyes99.656no
aerobicno97.962no
halophileno94.956no
spore-formingyes93.501no
glucose-utilyes88.742no
flagellatedno74.169no
thermophileyes98.314yes
glucose-fermentno51.087no

External links

@ref: 67770

culture collection no.: JCM 31827, DSM 104321

literature

  • topic: Genetics
  • Pubmed-ID: 29482868
  • title: Characterization and high-quality draft genome sequence of Herbivorax saccincola A7, an anaerobic, alkaliphilic, thermophilic, cellulolytic, and xylanolytic bacterium.
  • authors: Aikawa S, Baramee S, Sermsathanaswadi J, Thianheng P, Tachaapaikoon C, Shikata A, Waeonukul R, Pason P, Ratanakhanokchai K, Kosugi A
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2018.01.010
  • year: 2018
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Base Sequence, Cattle, Cellulose/*metabolism, *Clostridiales/classification/genetics/isolation & purification, Composting, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/microbiology, Genome, Bacterial/*genetics, Japan, Lignin/metabolism, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/