Strain identifier
BacDive ID: 164129
Type strain: 
Species: Paenibacillus sp.
Strain history: A. Gulati; CSIR-Inst. of Himalayan Bioresour. Technol., India; IHB B 3415.
NCBI tax ID(s): 58172 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164129
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Paenibacillus sp. JCM 31816 is a spore-forming, mesophilic bacterium that was isolated from Soil from the cold deserts of Himachal Pradesh.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 67770
- history: A. Gulati; CSIR-Inst. of Himalayan Bioresour. Technol., India; IHB B 3415.
doi: 10.13145/bacdive164129.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | yes | 94.2 |
| 125438 | yes | 92.755 |
enzymes
- @ref: 67770
- value: catalase
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil from the cold deserts of Himachal Pradesh
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_1606.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_335;97_567;98_1266;99_1606&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: HM563047
- Sequence Identity:
- Total samples: 1243
- soil counts: 631
- aquatic counts: 238
- animal counts: 232
- plant counts: 142
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus sp. IHB B 3415 16S ribosomal RNA gene, partial sequence
- accession: HM563047
- length: 1519
- database: nuccore
- NCBI tax ID: 867080
Genome sequences
- @ref: 67770
- description: Paenibacillus sp. IHB B 3415
- accession: GCA_000802655
- assembly level: contig
- database: ncbi
- NCBI tax ID: 867080
GC content
- @ref: 67770
- GC-content: 50.77
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 59.966 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.33 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 53.154 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.755 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.708 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 86.665 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 94.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 89.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 86.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 84.3 |
External links
@ref: 67770
culture collection no.: JCM 31816, MTCC 12461
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |